Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05509 and RBAM_033290

See Amino acid alignment / Visit BSNT_05509 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05509___ywrB.1.9828.seq
#    -bsequence dna-align/RBAM_033290___ywrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05509___ywrB-RBAM_033290___ywrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05509___ywrB-RBAM_033290___ywrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05509___ywrB
# 2: RBAM_033290___ywrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     530/594 (89.2%)
# Similarity:   530/594 (89.2%)
# Gaps:           3/594 ( 0.5%)
# Score: 2395.0
# 
#
#=======================================

BSNT_05509___      1 ATGAAAAACCATCCTTATCGGGATATGACGGCCGCAATGGTTCGCACCGG     50
                     ||||||   |||||.|||.||||.||.|||||.||.|||||.||.||.||
RBAM_033290__      1 ATGAAA---CATCCCTATTGGGACATTACGGCGGCGATGGTCCGAACGGG     47

BSNT_05509___     51 CATATTAGGGTTCGGCGGCGGACCTTCCGTGATTCCGCTGATCCGCCATG    100
                     |||.||.||.|||||.|||||||||||||||||.|||||.||||||||||
RBAM_033290__     48 CATTTTCGGATTCGGAGGCGGACCTTCCGTGATCCCGCTCATCCGCCATG     97

BSNT_05509___    101 AAGCGGTCAATAAATATAAATGGATTGACGATGATGAATTCGGAGAAATA    150
                     ||||.|||||||||||.||||||||.||.|||||||||||||||||||||
RBAM_033290__     98 AAGCCGTCAATAAATACAAATGGATAGATGATGATGAATTCGGAGAAATA    147

BSNT_05509___    151 TTAGCAATCGCTAATGCGCTTCCCGGACCGATTGCCACCAAAATGGCTGC    200
                     |||||.|||||.||||||||||||||||||||||||||.||||||||.||
RBAM_033290__    148 TTAGCGATCGCAAATGCGCTTCCCGGACCGATTGCCACAAAAATGGCCGC    197

BSNT_05509___    201 TTATCTGGGCTTTAAGCTAAAAGGCACAATAGGTGCAGTTGTGGCGACCC    250
                     .|||||||||||||||||.||||||||..||||.|||.|.|||||.||||
RBAM_033290__    198 GTATCTGGGCTTTAAGCTGAAAGGCACGTTAGGCGCAATCGTGGCAACCC    247

BSNT_05509___    251 TCGCCCACATTCTGCCTACATGTCTTGCGATGGTGGGCTTGTTTGCGGCT    300
                     |..||||.||||||||||||||.|||||.||||.||||||||||||||||
RBAM_033290__    248 TTACCCATATTCTGCCTACATGCCTTGCTATGGCGGGCTTGTTTGCGGCT    297

BSNT_05509___    301 GTAAATGTGTTAAGCCATTCAGCAATTGTTGCAGGTATGATTGGTGCTGT    350
                     ||.|||||.||||||||.||||||||||||||.||.||||||||.||.||
RBAM_033290__    298 GTCAATGTCTTAAGCCACTCAGCAATTGTTGCCGGCATGATTGGCGCCGT    347

BSNT_05509___    351 CACGCCGGTAATTGCGGTCATGCTCGGAATCATGGCGTACGAGTTTGGCC    400
                     .||.||||||||.||.|||||||||||.||.|||||||||||||||||||
RBAM_033290__    348 AACACCGGTAATCGCCGTCATGCTCGGCATTATGGCGTACGAGTTTGGCC    397

BSNT_05509___    401 AAAAAGCGCTTAAAGGTTTCGGCTGGGTCACCGGTATCCTGTTTTTTATC    450
                     |||||||||||||||||||||||||||||||.||.||.||||||||||||
RBAM_033290__    398 AAAAAGCGCTTAAAGGTTTCGGCTGGGTCACGGGCATTCTGTTTTTTATC    447

BSNT_05509___    451 ATCGCTTTTATCGGCCTGCAAACTTTACAGATTAATCCCGGCCTTGTCAT    500
                     |||||||||||||||||||||||.||||||||.|||||||||.|||||||
RBAM_033290__    448 ATCGCTTTTATCGGCCTGCAAACGTTACAGATCAATCCCGGCTTTGTCAT    497

BSNT_05509___    501 TATCATTTTCTTAGCATACGGGGCGTTTCATTTTAAACTGAAAGACAAAA    550
                     |||.|||||||||||||||||.|||||||||||||||.||||||||||||
RBAM_033290__    498 TATTATTTTCTTAGCATACGGCGCGTTTCATTTTAAATTGAAAGACAAAA    547

BSNT_05509___    551 TCACAAATAAACATTCAAAAGATAAAGGAATGTCAGCCTCATGA    594
                     ||||||||||||.|||||||||||||||||||||.|||||||||
RBAM_033290__    548 TCACAAATAAACGTTCAAAAGATAAAGGAATGTCGGCCTCATGA    591


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