Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05518 and RBAM_033310
See
Amino acid alignment /
Visit
BSNT_05518 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05518.1.9828.seq
# -bsequence dna-align/RBAM_033310___ywqL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05518-RBAM_033310___ywqL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05518-RBAM_033310___ywqL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05518
# 2: RBAM_033310___ywqL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity: 497/811 (61.3%)
# Similarity: 497/811 (61.3%)
# Gaps: 269/811 (33.2%)
# Score: 2295.0
#
#
#=======================================
BSNT_05518 0 -------------------------------------------------- 0
RBAM_033310__ 1 ATGAAAATACATCAAATTCACGATTTTGATCTAAATGATGAATCGGATTT 50
BSNT_05518 0 -------------------------------------------------- 0
RBAM_033310__ 51 TATTCGAACACAACAATCCCTAATACATAAAATCAACCTATCCCCCGTCA 100
BSNT_05518 0 -------------------------------------------------- 0
RBAM_033310__ 101 TCCATCCAGACTCCGTCAACACATGCGCAGGCGTCGACCTCGCTTATTGG 150
BSNT_05518 1 ------------------------GTGTGCAGTATTATCGTGATTGACGC 26
||.||||||||.||||||||||||||
RBAM_033310__ 151 GAGCAGGACGGGGAACCGTACGGCGTATGCAGTATCATCGTGATTGACGC 200
BSNT_05518 27 TGATACAAAAGAAGTCATTGAAAAAGTGCACAGCATGGGGAAAATCAGCG 76
|||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_033310__ 201 TGATACAAAAGAAGTGATTGAAAAAGTGCACAGCATGGGGAAAATCAGCG 250
BSNT_05518 77 TGCCGTATGTTTCCGGTTTTCTTGCGTTTCGTGAGCTGCCTTTGATCATC 126
|||||||||||||||||||||||||||||||.||||||||..|||||||.
RBAM_033310__ 251 TGCCGTATGTTTCCGGTTTTCTTGCGTTTCGCGAGCTGCCGCTGATCATT 300
BSNT_05518 127 GAGGCGGCGAAAAAGCTGGAGACGGAGCCGGATGTCTTCTTGTTTGATGG 176
||.|||||..|||||||||||.|||||||||||||.||.|||||||||||
RBAM_033310__ 301 GAAGCGGCCGAAAAGCTGGAGGCGGAGCCGGATGTGTTTTTGTTTGATGG 350
BSNT_05518 177 CAACGGATATTTGCATTACAACCATATGGGCGTTGCCACCCATGCGGCTT 226
||||||.|||.||||||||||.||||||||||||||||||||||||||||
RBAM_033310__ 351 CAACGGGTATCTGCATTACAATCATATGGGCGTTGCCACCCATGCGGCTT 400
BSNT_05518 227 TTTTTCTGGGCAAGCCGACGATTGGGATTGCGAAAACCTATCTCAAAATC 276
||||||||||.|||||.||.||||||||||||||||||||||||||||||
RBAM_033310__ 401 TTTTTCTGGGTAAGCCTACAATTGGGATTGCGAAAACCTATCTCAAAATC 450
BSNT_05518 277 AAAGGCTATGATTTCGTGATGCCTGAAAATGAAGTCGGTGCATACACCGA 326
|||||||..|||||.|.||||||.||||||||||||||.||.||||||||
RBAM_033310__ 451 AAAGGCTGCGATTTTGAGATGCCCGAAAATGAAGTCGGCGCCTACACCGA 500
BSNT_05518 327 TATTCTCATTGACGGCGAGGTATATGGCCGGGCGCTGCGAACGCGGCGGG 376
||||||||||||||||||||||||||||||||||||.||.||.|||||||
RBAM_033310__ 501 TATTCTCATTGACGGCGAGGTATATGGCCGGGCGCTTCGGACACGGCGGG 550
BSNT_05518 377 ACGTGAAGCCTATTTTCTTGTCTTGCGGTAATTATATTGATTTAGACAGC 426
|||||||||||||.||||||||||||||..||.|.|||||||||||.|||
RBAM_033310__ 551 ACGTGAAGCCTATCTTCTTGTCTTGCGGACATAACATTGATTTAGAAAGC 600
BSNT_05518 427 AGCTATCAGATCACGATGAGCTTGATCAATCAAGAAAGCAGGCTGCCGAT 476
||||||||||||||.||||...|||||||||.|||.||||||||||||||
RBAM_033310__ 601 AGCTATCAGATCACAATGAAAATGATCAATCGAGACAGCAGGCTGCCGAT 650
BSNT_05518 477 CCCTGTCCGCCTGGCTGACGTTGAGACGCATGTTTTGCGAACGTTTTA-C 525
|||||||||.|||||||||.||||.||||||||||||||||||||||| |
RBAM_033310__ 651 CCCTGTCCGTCTGGCTGACCTTGAAACGCATGTTTTGCGAACGTTTTATC 700
BSNT_05518 526 AGAAAAATCACGTGTAACACTTGGGGCTCTAAGTCATCAAGTGTTTTTTT 575
.||||||||||||||||
RBAM_033310__ 701 GGAAAAATCACGTGTAA--------------------------------- 717
BSNT_05518 576 GTATGTGTGTGCTTTCATGGTCTCAAAAACCTTGTCGTCCTTGTGGAGAG 625
RBAM_033310__ 717 -------------------------------------------------- 717
BSNT_05518 626 GTTTTATTTGA 636
RBAM_033310__ 717 ----------- 717
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.