Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05533 and RBAM_033470

See Amino acid alignment / Visit BSNT_05533 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence dna-align/BSNT_05533___ywqD.1.9828.seq
#    -bsequence dna-align/RBAM_033470___ywqD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05533___ywqD-RBAM_033470___ywqD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05533___ywqD
# 2: RBAM_033470___ywqD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity:     482/748 (64.4%)
# Similarity:   482/748 (64.4%)
# Gaps:         119/748 (15.9%)
# Score: 1596.5
# 
#
#=======================================

BSNT_05533___      1 -----------------------ATGCGGA----GAAATGTCATTGCAAT     23
                                            |..||||    |||..||.|||||.||
RBAM_033470__      1 ATGTTGACGCGTAAAAAAGACAAACCCGGAAAACGAAGCGTGATTGCGAT     50

BSNT_05533___     24 GACAGAGCCGAAATCCTTGAACTCTGAACAATATCGGACGATTCGCACGA     73
                     |.|.||||||||||||.|.|||||.|||||||||||.|||||.|||||.|
RBAM_033470__     51 GTCTGAGCCGAAATCCATCAACTCAGAACAATATCGCACGATCCGCACAA    100

BSNT_05533___     74 ATATAGAATTTGCTTCAGTGG--ACCGCCAGATGAAATCAGTGATGATCA    121
                     |.||.||||||.||||.||.|  ||.|  ||.||||.||..|..||||||
RBAM_033470__    101 ACATTGAATTTTCTTCCGTTGATACGG--AGGTGAAGTCCCTTTTGATCA    148

BSNT_05533___    122 CATCGGCTTGTCCCGGAGAAGGAAAATCAACAACGGCCGCCAACCTGGCT    171
                     ||||.||..||||.|.||||||||||||.|||||.||.||||||||.||.
RBAM_033470__    149 CATCCGCCGGTCCGGAAGAAGGAAAATCGACAACCGCGGCCAACCTTGCC    198

BSNT_05533___    172 GTCGTATTCGCCCAGCAGGGAAAAAAAGTGCTCCTGATTGATGCTGATTT    221
                     ||||||||.||.||||||||.|||||||||||..|.||||||||.|||.|
RBAM_033470__    199 GTCGTATTTGCACAGCAGGGGAAAAAAGTGCTTTTAATTGATGCGGATCT    248

BSNT_05533___    222 GCGAAAACCAACAGTACATACGGCCTTTTTTCTTGAAAAT-----ACGG-    265
                     |||.|||||.||.||.||       |||...|||.|||.|     |||| 
RBAM_033470__    249 GCGCAAACCGACGGTTCA-------TTTCACCTTCAAATTGGATAACGGA    291

BSNT_05533___    266 -TTGGCTTAACATCTGTTTTATTAA---AGA-----------AAAGC---    297
                      ..||.|||||.||..|..|.||||   |||           |||||   
RBAM_033470__    292 ACCGGATTAACGTCACTGCTGTTAAAACAGATGCCGTTTCAGAAAGCCGT    341

BSNT_05533___    298 TCTATGGAGCAGGCTGTACAGGCATCGAATGAA--AAACATCTTGACGTG    345
                     .||     ||.|||||            |||||  ||||  ||.||..|.
RBAM_033470__    342 CCT-----GCCGGCTG------------ATGAAGCAAAC--CTGGATATT    372

BSNT_05533___    346 CTGACGAGCGGCCCGATCCCGCCAAACCCGGCCGAGCTTCTCTCCTCGAA    395
                     .|.||||||||.|||||||||||.||.|||||.||||||.|.||..|| .
RBAM_033470__    373 TTAACGAGCGGGCCGATCCCGCCCAATCCGGCGGAGCTTTTATCGACG-G    421

BSNT_05533___    396 GTG-GATGAAGGAGCTTGCATACGAAGCGTGTGCGGCA---TATGATATG    441
                     ||| .|||||.||.|||...|..|||||   .||.|.|   |||||||.|
RBAM_033470__    422 GTGCCATGAAAGATCTTCTGTCAGAAGC---CGCCGAAGTTTATGATAAG    468

BSNT_05533___    442 GTCATTTTTGATACGCCGCCTATTCTTGCCGTAGCAGATGCACAGATTTT    491
                     ||.|||||.||||||||.||..||.|.||||||||.|||.|..|.||.||
RBAM_033470__    469 GTGATTTTGGATACGCCTCCCGTTTTGGCCGTAGCCGATACGAAAATATT    518

BSNT_05533___    492 AGGCAACGTGGCAGACGGTTCTGTTCTGGTTATTTCAAGCGGGAAAACAG    541
                     |||||.|....|.|||||..|..||.||||.||.||||||||||||||.|
RBAM_033470__    519 AGGCAGCTACACTGACGGGGCCATTATGGTGATCTCAAGCGGGAAAACGG    568

BSNT_05533___    542 AAAAAGAACAAGCCGCAAAAGCGAAAGAGGCGCTTGA-AACGTGCAAAAG    590
                     |.||.|||.||||.||.||.||||||||.|||||.|| .|| |||....|
RBAM_033470__    569 ACAAGGAAAAAGCGGCCAAGGCGAAAGAAGCGCTCGATTAC-TGCCCGTG    617

BSNT_05533___    591 CAAGCTTCTTGGGGCGATTATGAACGGCAAAAAGCTTTCGAAGCACTCTG    640
                     ||||||.||||||||..|.||||||||.||.||.|...||||.|||||.|
RBAM_033470__    618 CAAGCTCCTTGGGGCCGTGATGAACGGGAAGAAACAAACGAAACACTCGG    667

BSNT_05533___    641 AATACGGATATTACGGA-AACAAGGACAATTTCATGCAAAATAAATAA    687
                     |.||||..||||||||| ||.||                         
RBAM_033470__    668 ACTACGCCTATTACGGACAATAA-------------------------    690


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