Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05540 and RBAM_033510

See Amino acid alignment / Visit BSNT_05540 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:02
# Commandline: needle
#    -asequence dna-align/BSNT_05540___ywpJ.1.9828.seq
#    -bsequence dna-align/RBAM_033510___ywpJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05540___ywpJ-RBAM_033510___ywpJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05540___ywpJ-RBAM_033510___ywpJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05540___ywpJ
# 2: RBAM_033510___ywpJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity:     621/879 (70.6%)
# Similarity:   621/879 (70.6%)
# Gaps:          42/879 ( 4.8%)
# Score: 2068.5
# 
#
#=======================================

BSNT_05540___      1 GTGAAATTAATTGCGATTGATTTAGATGGAACCTTACTCAACAGCAAGCA     50
                     ||||||.|.|||||.||.|||.|.||.||.||..|.||.|||||||..||
RBAM_033510__      1 GTGAAACTGATTGCCATAGATCTGGACGGCACACTGCTGAACAGCAGTCA     50

BSNT_05540___     51 TCAGGTAAGCTTGGAAAATGA---------AA---ACGCACTGCGGCAGG     88
                     |||.||||||...||||||||         ||   |.|| ||  ||||.|
RBAM_033510__     51 TCAAGTAAGCGATGAAAATGAGCGGGCTTTAAGGGAAGC-CT--GGCAAG     97

BSNT_05540___     89 CGCAGCTGGACGGCATTGAAGTGGTGGTGTCAACTGGGCGCGCTCATTTT    138
                     ||         ||.||||||.|.|||||.||.||.||.|||||.||||||
RBAM_033510__     98 CG---------GGAATTGAAATCGTGGTTTCCACGGGACGCGCGCATTTT    138

BSNT_05540___    139 GACGT-CATGTCAATCTTTGAACCGCTGGGGATCAAAACATGGGTCATCA    187
                     ||||| || .||.||.||.||||||||.||.||.|||||||||.|.||||
RBAM_033510__    139 GACGTGCA-CTCCATATTCGAACCGCTCGGCATAAAAACATGGATTATCA    187

BSNT_05540___    188 GTGCAAACGGCGCCGTCATTCACGATCCCGACGGCAGGCTTTATCATCAC    237
                     |.||||||||.||||.||||||.|.|||.||||||||.||.||.||....
RBAM_033510__    188 GCGCAAACGGAGCCGCCATTCATGCTCCTGACGGCAGCCTGTACCACTGT    237

BSNT_05540___    238 GAAACGATTGATAAGAAAC--GGGCGTATGACATTCTCTCATGGCTTGAG    285
                     ||..||||||  |||||||  |.||....|.||||.|.||.||||||||.
RBAM_033510__    238 GATGCGATTG--AAGAAACAAGAGCCCGCGGCATTTTGTCCTGGCTTGAA    285

BSNT_05540___    286 TCGGAAAACTATTATTATGAGGTATTCACAGGTTCAGCGATTTATACGCC    335
                     ..|.|..|.|||||.||||||||.||.|||.....|||.||.||||||||
RBAM_033510__    286 GAGAATCAATATTACTATGAGGTGTTTACAAACAAAGCCATCTATACGCC    335

BSNT_05540___    336 GCAAAACGGCAGAGAACTTCTTGATGTTGAGCTGGACAGATTCAGAAGCG    385
                     ..|||.||||||..|.||.||.|||.|.||..|||||.|..|.|.|||||
RBAM_033510__    336 TGAAACCGGCAGGCAGCTGCTCGATATCGAAATGGACCGGGTGAAAAGCG    385

BSNT_05540___    386 CAAACCCGGAAACAGATCTTTCTGTCCTTAAGCAGGCGGCCGAGGTGCAA    435
                     ||||.||||||||.||||||||.||..|..|.||||||||....|||||.
RBAM_033510__    386 CAAATCCGGAAACCGATCTTTCCGTTTTGGAACAGGCGGCTTCAGTGCAG    435

BSNT_05540___    436 TACAGCCAATCGGGCTTTGCTTACATTAACTCCTTTCAAGAGCTGTTTG-    484
                     ||||||||.||.|||||||||||||||.|.||.|..|..||.||.|||| 
RBAM_033510__    436 TACAGCCAGTCCGGCTTTGCTTACATTCATTCATACCGTGAACTCTTTGA    485

BSNT_05540___    485 --AAGCCGATCAGCCAATCGATTTTTACAATATTCTCGGCTTTTC-TTTC    531
                       |||..||.||.|   |.||||||||.|||||||||||.||||| |||.
RBAM_033510__    486 GAAAGAAGAGCATC---TGGATTTTTATAATATTCTCGGATTTTCGTTTG    532

BSNT_05540___    532 TTCAAAGAAAAGCTTGAGGCAGGCTGGAAAAGATATGAGCATGCCG-AAG    580
                     .|.|..| .|||||..|.||.||||||.|..||| |.|||...|.| |||
RBAM_033510__    533 ATGAGCG-GAAGCTGAAAGCGGGCTGGGACCGAT-TCAGCGGTCAGAAAG    580

BSNT_05540___    581 ATTTGACGCTTGTCAGTTCGGCTGAGCACAACTTTGAGCTTTCTTCCCGC    630
                     ||.|.||.||||||||.||.||.||.|||||||||||.||..|.||.||.
RBAM_033510__    581 ATCTCACCCTTGTCAGCTCTGCCGATCACAACTTTGAACTGGCGTCTCGA    630

BSNT_05540___    631 AAAGCTTCCAAGGGGCAGGCGCTGAAGAGGCTTGCAAAACAGCTGAATAT    680
                     ||.||.||.||.|||||||||||.||..||||.||..||.||||....||
RBAM_033510__    631 AACGCCTCTAAAGGGCAGGCGCTCAAACGGCTGGCGCAAAAGCTCGGCAT    680

BSNT_05540___    681 TCCGCTCGAGGAAACCGCTGCTGTAGGTGACAGTTTAAATGACAAATCGA    730
                     ||||.|.|..||||||||.||.||.||||||||.|||||||||.|.||.|
RBAM_033510__    681 TCCGATGGCTGAAACCGCCGCGGTCGGTGACAGCTTAAATGACTATTCAA    730

BSNT_05540___    731 TGCTGGAGGCTGCGGGAAAAGGTGTAGCGATGGGCAATGCCCGGGAAGAT    780
                     ||||..||||.||.||||||||..||||||||||.|||||..|.||||||
RBAM_033510__    731 TGCTTCAGGCGGCCGGAAAAGGCATAGCGATGGGGAATGCGAGAGAAGAT    780

BSNT_05540___    781 ATCAAATCGATAGCCGATGCGGTCACCTTAACCAATGACGAACATGGTGT    830
                     ||.|||..|||.||.|||||.||.||.||.||.|||||..||.|.||.||
RBAM_033510__    781 ATTAAAGAGATCGCTGATGCCGTTACATTGACAAATGATCAAAACGGCGT    830

BSNT_05540___    831 CGCACATATGATGAAACATTTGATGTAG-    858
                     .||.||||||||.|...||||..||| | 
RBAM_033510__    831 TGCGCATATGATCAGGAATTTACTGT-GA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05540 and RBAM_033510

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
