Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05582 and RBAM_033750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05582___ywnG.1.9828.seq
# -bsequence dna-align/RBAM_033750___ywnG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05582___ywnG-RBAM_033750___ywnG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05582___ywnG-RBAM_033750___ywnG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05582___ywnG
# 2: RBAM_033750___ywnG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 545
# Identity: 319/545 (58.5%)
# Similarity: 319/545 (58.5%)
# Gaps: 121/545 (22.2%)
# Score: 972.0
#
#
#=======================================
BSNT_05582___ 1 ATGATTAGTCTGGATAAAGATGAAAACGAAATTGAAAATCATAATG---- 46
|||||.|...|.||||||||..||.|| |||||.|| |
RBAM_033750__ 1 ATGATCACCATCGATAAAGACAAAGAC------GAAAACCA----GCCGC 40
BSNT_05582___ 47 --AAGAAAATAGCCTCGTTGAAGAGGAGACTGCACCTGTTGAACAGGAGA 94
||.||||.|||| |||
RBAM_033750__ 41 TCAATAAAAAAGCC-CGT-------------------------------- 57
BSNT_05582___ 95 CCCGCCAGCTGAGCGCCTCTGCTGTCAAGTCGCTATCCGACATTGCCAAG 144
||.||..|||||||.|||||.
RBAM_033750__ 58 -----------------------------TCCCTTGCCGACATCGCCAAA 78
BSNT_05582___ 145 TGGGGCAAAATTTCTGGCATCTTGTTAATCATTATGGGATCGCTTGTCAC 194
|||||.||.||..|.|.|.|.||..|.|||||.|.|||.||.|||..|.|
RBAM_033750__ 79 TGGGGAAAGATCACCGCCGTGTTTCTGATCATCACGGGCTCTCTTTCCGC 128
BSNT_05582___ 195 TCTGTCTG-CTTTGATGACAGTGATTGGCGCCATCCCGGGCGTACTGCTC 243
||||||.| |.||| ||||..||.|.||.|||||.|||||.||.||||||
RBAM_033750__ 129 TCTGTCAGCCATTG-TGACGCTGCTCGGAGCCATTCCGGGGGTTCTGCTC 177
BSNT_05582___ 244 ATTATATCAGGCGTATTTTTGATGCGCTCAGCAAAAGCAGCCGCGGAAGC 293
||.||.||.|||||..|..||||||||||.||||||||.||.|| .||
RBAM_033750__ 178 ATCATTTCCGGCGTCATGCTGATGCGCTCGGCAAAAGCGGCTGC---CGC 224
BSNT_05582___ 294 C------GACGGAAATCTAGCCGGCAGCGCTGGCGAAAGCATGCTTGAAA 337
| ||.||| ||||..|..|.|||.|..||||..|||||||.|.
RBAM_033750__ 225 CCTTCAGGAAGGA---CTAGAAGAAAACGCGGAAGAAAATATGCTTGCAC 271
BSNT_05582___ 338 ATTACGGGACATTTATAAAAATGCAGCTGTTTTATGCAGCATCCAGTATC 387
||||||.|.|||||||.|||||||||.|.|||||.||.|||||||||.|.
RBAM_033750__ 272 ATTACGCGTCATTTATCAAAATGCAGTTTTTTTACGCGGCATCCAGTGTG 321
BSNT_05582___ 388 GTTACTGTCCTGATCGGGATCATTGTAGC---CATTTTCGT--------- 425
|| ||.||| ||||.|.|| .|||||.||
RBAM_033750__ 322 GT----------ATTGGG--CATTCTCGCTTTTATTTTAGTCGTCATCTT 359
BSNT_05582___ 426 -GCTGGTGGTAATCGGCATTGCTGCTTTTGAGAACACTCCTTCGTATGAT 474
||| ||.|||||.|||...||||.|.|.|.||||..|.|||||||.
RBAM_033750__ 360 CGCT----GTCATCGGAATTATCGCTTATCACAGCACTGATACGTATGAC 405
BSNT_05582___ 475 GATCCGGATTCTTATTATTATGAGGATGATCCGGTGTTTGAATAA 519
...||.|||||.|||||.||||||.|.||.|||||||||||||.|
RBAM_033750__ 406 ACGCCTGATTCATATTACTATGAGAACGACCCGGTGTTTGAATGA 450
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