Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05585 and RBAM_033770

See Amino acid alignment / Visit BSNT_05585 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_05585___ywnE.1.9828.seq
#    -bsequence dna-align/RBAM_033770___ywnE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05585___ywnE-RBAM_033770___ywnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05585___ywnE-RBAM_033770___ywnE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05585___ywnE
# 2: RBAM_033770___ywnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1459
# Identity:    1143/1459 (78.3%)
# Similarity:  1143/1459 (78.3%)
# Gaps:          20/1459 ( 1.4%)
# Score: 4388.0
# 
#
#=======================================

BSNT_05585___      1 GTGAGTATTTCTTCCATCCTTTTAT---CACTTTTTTTCATTTTAAATAT     47
                     |||||.|||||.|   |..||||||   .|.||||||||.||||||||||
RBAM_033770__      1 GTGAGCATTTCAT---TTATTTTATTCGGATTTTTTTTCGTTTTAAATAT     47

BSNT_05585___     48 TCTTTTGGCCATCATTGTCATCTTCAAAGAACGGCGCGATGCCAGTGCAT     97
                     .|||||||||.||||..|.||.|||||||||.|.|||||||||||.||.|
RBAM_033770__     48 ACTTTTGGCCGTCATCATGATTTTCAAAGAAAGACGCGATGCCAGCGCTT     97

BSNT_05585___     98 CTTGGGCGTGGCTGCTT-GTTCTTTTCTTTATTCCCGTTTTAGGCTTTAT    146
                     |.|||||.||||| ||| ||||||||.|||||||||.|||||||.|||||
RBAM_033770__     98 CATGGGCTTGGCT-CTTGGTTCTTTTTTTTATTCCCATTTTAGGGTTTAT    146

BSNT_05585___    147 TTTATACTTATTATTCGGCCATAATCTCAGACACAAGCATTTGTTTCAAT    196
                     |||||||.|.||||||||||||||.||.||||.|||||||.|||||||||
RBAM_033770__    147 TTTATACCTGTTATTCGGCCATAACCTGAGACGCAAGCATCTGTTTCAAT    196

BSNT_05585___    197 GGGAAGACCGGAAAAAGATTGGAATTGAAAGGCTGCTGAAGCATCAGCTT    246
                     ||||||||||.|||||.||.||.|||||||.||||||||||..||||| |
RBAM_033770__    197 GGGAAGACCGTAAAAAAATCGGGATTGAAAAGCTGCTGAAGTCTCAGC-T    245

BSNT_05585___    247 GAA-GATTTAGAA-ACCAAGCAATTTCAGTTCAATAACCGGGCAACCTTT    294
                     ||| |||.| ||| .|.|.||||||.||.||.||.|||.|.||.||..|.
RBAM_033770__    246 GAAGGATCT-GAAGTCGAGGCAATTCCAATTTAACAACAGAGCGACTGTG    294

BSNT_05585___    295 GATAACAAAGATTTAATTTATATGCTGATTATGAATAACCATGCTGTGTT    344
                     |||||.|||||..|.||.||||||||..|.|||||.|||||.||.||.||
RBAM_033770__    295 GATAATAAAGACCTCATCTATATGCTTGTCATGAACAACCACGCAGTCTT    344

BSNT_05585___    345 TACAGAGGATAATTCAGTTGACGTCATTACAGATGGACGGGATAAATTTC    394
                     |||||||||||||||.||.||..|..|.||.||.||.||.|||||.||..
RBAM_033770__    345 TACAGAGGATAATTCGGTGGAGATTTTGACGGACGGGCGCGATAAGTTCA    394

BSNT_05585___    395 AGCGGCTGCTGAGTGACATTTCAAAGGCTAAGGATCATATCCATTTACAG    444
                     |.||..|..|||..||||||||.||.||.||.|||||.||.||..|.||.
RBAM_033770__    395 AACGCTTAATGAAGGACATTTCCAACGCAAAAGATCACATTCACCTTCAA    444

BSNT_05585___    445 TATTATATTTATAAAGGCGATGAATTAGGCAAAAAATTGCGGGACGCTCT    494
                     ||.||||||||||||||.||||||.|.||.|||||||||||.||.|| ||
RBAM_033770__    445 TACTATATTTATAAAGGTGATGAACTGGGAAAAAAATTGCGCGATGC-CT    493

BSNT_05585___    495 CA-TCCAAAAGGCGAAAGAAGGTGTTCAGGTCAGAGTGCTTTATGATGAA    543
                     .| |..||||.||....|||||.||..|.|||||||||.|.|||||||||
RBAM_033770__    494 TAGTGAAAAAAGCACGCGAAGGCGTAAAAGTCAGAGTGTTATATGATGAA    543

BSNT_05585___    544 CTCGGGTCCAGAACGCTGAGAAAAAAGTTTTTTAAAGAGCTTCGCGAGGC    593
                     |||||.||.|||.|.||.||||||||.||.||.|||..|||.||.||.||
RBAM_033770__    544 CTCGGTTCAAGATCACTCAGAAAAAAATTCTTCAAACCGCTGCGGGACGC    593

BSNT_05585___    594 TGGCGGGCATGTGGAGGTCTTTTTCCCTTCAAAGCTCAGGCCGATTAACC    643
                     .|||||.||||||||.||||||||.|||||.|.|||..|.||||||||..
RBAM_033770__    594 CGGCGGCCATGTGGAAGTCTTTTTTCCTTCCAGGCTTCGTCCGATTAATT    643

BSNT_05585___    644 TGCGGCTGAATTACCGGAACCATCGAAAGCTTGTGATCATAGACG--GAA    691
                     |||||||.|||||.|||||.||.||.|||||.||.|||||.||||  |||
RBAM_033770__    644 TGCGGCTCAATTATCGGAATCACCGCAAGCTCGTCATCATTGACGGCGAA    693

BSNT_05585___    692 TGACCGGTTATGTCGGAGGCTTTAACGTCGGAGATGAGTATCTAGGGCTT    741
                       |||||.||||||||.||||||||||||||||||||.|||||.||.||.
RBAM_033770__    694 --ACCGGCTATGTCGGCGGCTTTAACGTCGGAGATGAATATCTCGGCCTG    741

BSNT_05585___    742 AATCCGAAATTCGGTTATTGGCGGGATACGCATATCCGGCTGCAAGGAAC    791
                     ||||||||||||||.||.|||||.||||||||..||.||||.|||||.||
RBAM_033770__    742 AATCCGAAATTCGGCTACTGGCGCGATACGCACCTCAGGCTTCAAGGCAC    791

BSNT_05585___    792 GGCCGTGCATGCCATCCAAACACGATTCATCCTTGACTGGAACCAAGCTT    841
                     |||.||.||.|||||.||.|||||.||.|||||.||.|||||||||||.|
RBAM_033770__    792 GGCGGTACACGCCATTCAGACACGGTTTATCCTCGATTGGAACCAAGCCT    841

BSNT_05585___    842 CTCATCACCATACGCTGACATATATTCCAAATCACTTTCCTGATTACGGC    891
                     |.|||||.||||||||.|||||..||||.|||||.|||||.||.|.||..
RBAM_033770__    842 CCCATCATCATACGCTCACATACGTTCCGAATCATTTTCCGGAATGCGAG    891

BSNT_05585___    892 CCAAAAGGCAACGTCGGGATGCAGATTGTCACAAGCGGCCCTGATTCGGA    941
                     ||.||.|||||.||||||||||||||||||||.|||||.||.||.||.||
RBAM_033770__    892 CCGAAGGGCAATGTCGGGATGCAGATTGTCACGAGCGGACCGGACTCAGA    941

BSNT_05585___    942 ATGGGAACAAATTAAAAATGGCTACATCAAAATGATTTCGAAC-GCCAAG    990
                     ||||||||||||||||||.|||||.|||||.|||||.|| ||| |||||.
RBAM_033770__    942 ATGGGAACAAATTAAAAACGGCTATATCAAGATGATCTC-AACGGCCAAA    990

BSNT_05585___    991 CGTTCCATTTTGATACAAACACCTTATTTTATCCCAGATGCAAGCCTGCT   1040
                     ||.||.||..||||.||.||.|||||.|||||.||.||..||||.||..|
RBAM_033770__    991 CGGTCAATCCTGATTCAGACGCCTTACTTTATTCCTGACTCAAGTCTTTT   1040

BSNT_05585___   1041 GGATGCTTTAAGGATCGCTTGCCTTTCGGGCATTGACGTTAACATTATGA   1090
                     .|||||..|.||||||||.||.||.||.|||||.|||||.||.||.||||
RBAM_033770__   1041 AGATGCCCTCAGGATCGCCTGTCTGTCAGGCATCGACGTCAAAATCATGA   1090

BSNT_05585___   1091 TTCCGAACAAGCCTGATCACGCCTTTGTATACTGGGCAACACTTTCGTAT   1140
                     |||||||||||||.||||||||.||.||.||||||||.||..|.||.||.
RBAM_033770__   1091 TTCCGAACAAGCCGGATCACGCTTTCGTTTACTGGGCGACTTTATCTTAC   1140

BSNT_05585___   1141 ATCGGCGATCTGCTGAAAGCCGGAGCCACTGTCTATATTTACGATAACGG   1190
                     |||||||||||..||||||||||||||.|.|||||.||||||||||||||
RBAM_033770__   1141 ATCGGCGATCTTTTGAAAGCCGGAGCCTCAGTCTACATTTACGATAACGG   1190

BSNT_05585___   1191 CTTTATTCACGCGAAAACCATCGTGGTGGATGACGAAATCGCTTCAGTCG   1240
                     |||||||||.||.|||||.||.||.||.|||||.||.|..||||||||||
RBAM_033770__   1191 CTTTATTCATGCAAAAACGATTGTCGTCGATGATGAGACGGCTTCAGTCG   1240

BSNT_05585___   1241 GCACAGCGAACATTGATGTCCGAAGCTTCAGGCTGAATTTTGAGGTTAAT   1290
                     |.||.|||||.||.||.|||.||||||||||.||.||||||||.||.||.
RBAM_033770__   1241 GTACGGCGAATATCGACGTCAGAAGCTTCAGACTTAATTTTGAAGTCAAC   1290

BSNT_05585___   1291 GCATTTATTTACGATATCACTATTGCTAAAAAACTGGTTTCAACTTTTAA   1340
                     ||.||||||||.||..||||.|||||.||||||||..||||..|.|||||
RBAM_033770__   1291 GCCTTTATTTATGACGTCACCATTGCGAAAAAACTCATTTCCTCATTTAA   1340

BSNT_05585___   1341 AGAAGATTTGCTAGTATCCAGAAAATTCACCTATGAGGAGTATTTGCAGC   1390
                     |||||||.||||.||.||||||||||..||.|||||.||.|||..|.|||
RBAM_033770__   1341 AGAAGATCTGCTCGTCTCCAGAAAATATACGTATGAAGAATATCAGGAGC   1390

BSNT_05585___   1391 GCCCGTTGTGGATTCGAATAAAAGAATCCGTCTCGCGGCTGTTGTCGCCG   1440
                     |..||.|||||||.||.||.||||||||..|.||..|.||..|.||||||
RBAM_033770__   1391 GTTCGCTGTGGATCCGCATTAAAGAATCGATTTCAAGACTTCTTTCGCCG   1440

BSNT_05585___   1441 ATCTTATAA   1449
                     ||.||.|||
RBAM_033770__   1441 ATTTTGTAA   1449


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