Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05617 and RBAM_033930
See
Amino acid alignment /
Visit
BSNT_05617 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_05617___ywmB.1.9828.seq
# -bsequence dna-align/RBAM_033930___ywmB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05617___ywmB-RBAM_033930___ywmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05617___ywmB-RBAM_033930___ywmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05617___ywmB
# 2: RBAM_033930___ywmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity: 592/765 (77.4%)
# Similarity: 592/765 (77.4%)
# Gaps: 42/765 ( 5.5%)
# Score: 2313.5
#
#
#=======================================
BSNT_05617___ 1 ATGAACATGAAGAAAAAACAAGTAAGCCACGCTATTATC---ATTTCCGT 47
||||||||||||..||...|||.| ||.||| .|||..||
RBAM_033930__ 1 ------ATGAAGAAAAAAAGAGCTGGCCGC---ATCATCTTGTTTTTTGT 41
BSNT_05617___ 48 CATGTTAAGCTTCGTCATTGCTGTTTTCCATACCATCCATGCGAGTGAAT 97
..|.||||||..|.|.||.||.||.||.|||.||||.|||||.|||||..
RBAM_033930__ 42 TTTTTTAAGCACCTTAATAGCGGTATTTCATTCCATTCATGCAAGTGAGC 91
BSNT_05617___ 98 TAACGCCGTTAGCACAAATGGCAGAGGGGATGGAACGCCAAGATGTGTCA 147
|..|.|||.|.||.||.||.||.||.||.|||||.||.|||.|.||..|.
RBAM_033930__ 92 TGTCTCCGCTTGCCCAGATTGCCGAAGGAATGGAGCGGCAACAGGTCACT 141
BSNT_05617___ 148 ATAGATAAGTGGACATTGCATGCAAAACAA------AACATGTCACTGAC 191
.|||||.|.|||||..|.|||||.|||.|| |||.||||||||
RBAM_033930__ 142 GTAGATGAATGGACGCTTCATGCGAAAAAAAATCTGAACCTGTCACTG-- 189
BSNT_05617___ 192 CGAAAAAGAATTTTATCA------AAAAGTGCAACGTTTAAAATCAGAGT 235
|..||||||.||.| ||||| ||| |.||..|..|||
RBAM_033930__ 190 ----AGTGAATTTGATGACAAGGTAAAAG---AAC---TGAAGACGCAGT 229
BSNT_05617___ 236 ATCGTCAATATGATTGGGTGATT--GCACGGGAAGATAAAATGATAAAGG 283
|||..||||||.||||| ||.| ||.||||||||||||||..||||||
RBAM_033930__ 230 ATCCGCAATATCATTGG--GAATCCGCGCGGGAAGATAAAATTGTAAAGG 277
BSNT_05617___ 284 CAATTGGCACATATACTGACAAAAAAAATCGTACTTCTTTTAGACTGCAG 333
|..|.|||||.|||.|||||||||||||||..||..||||||.|||||||
RBAM_033930__ 278 CCGTCGGCACGTATTCTGACAAAAAAAATCACACAACTTTTAAACTGCAG 327
BSNT_05617___ 334 CTTGTCACAACCCTCAAAAAACACAATCCAACTTCGTATTTATTATATGA 383
||.|||||.|||||||||||.||.||.|||||||||||||||||||||||
RBAM_033930__ 328 CTCGTCACTACCCTCAAAAACCAGAACCCAACTTCGTATTTATTATATGA 377
BSNT_05617___ 384 GCAAATGAGTCTAGAGACACCGGATAGCTGGAATGATACATATGAACAGT 433
|||||||||.|..|||..||||||.|.|||||||||||||||||||||||
RBAM_033930__ 378 GCAAATGAGCCCGGAGCAACCGGAAAACTGGAATGATACATATGAACAGT 427
BSNT_05617___ 434 TTGAACGGGAGACACTTGGGATATTCCAAGAAAAAGTAGTTATTTTTACT 483
||||||||.||.|||.||..|||||.|||.|.||||||.|||||||||||
RBAM_033930__ 428 TTGAACGGCAGGCACATGACATATTTCAAAATAAAGTATTTATTTTTACT 477
BSNT_05617___ 484 TGTCTAAATGGTCACTTAGATGATAATATGAATATTGTTTTGCAAAAAAA 533
||||||||.|||||.|||.||||||||||||.||||||||||||||||||
RBAM_033930__ 478 TGTCTAAAGGGTCATTTAAATGATAATATGAGTATTGTTTTGCAAAAAAA 527
BSNT_05617___ 534 AGCAAATCAG-TTATTAAATGAATTTCAAGCAAGATCAGTAGAACATGTA 582
||||.|.||| |.||.||| ||||||.|||||||..||||.|||||||||
RBAM_033930__ 528 AGCAGAACAGCTCATGAAA-GAATTTGAAGCAAGTCCAGTTGAACATGTA 576
BSNT_05617___ 583 GTTGAGCCAAATTTCGTTTCTATTTCTGCGTTTACAGATGAGTGGGAAGA 632
||||||||..|||||||||||.|||||||.||||||.||.|||||..|||
RBAM_033930__ 577 GTTGAGCCTCATTTCGTTTCTGTTTCTGCATTTACATATAAGTGGACAGA 626
BSNT_05617___ 633 GTACATTATGACCTCGAAACATAAAATGAATTTGCAAATTGCACTTAGAA 682
.|||||.|||||.|||||||||||.||||||.|||||.||||.|||||||
RBAM_033930__ 627 TTACATCATGACATCGAAACATAAGATGAATGTGCAAGTTGCGCTTAGAA 676
BSNT_05617___ 683 GTGCAGAAATGGGCGGAAAACATACCGTTACGGTTGGCACACCAATCGTT 732
||||.|.||||||||.|||||||||||||||||||||||||||||||||.
RBAM_033930__ 677 GTGCGGGAATGGGCGAAAAACATACCGTTACGGTTGGCACACCAATCGTG 726
BSNT_05617___ 733 ACGACTGAATATTAA 747
|||||||||||||||
RBAM_033930__ 727 ACGACTGAATATTAA 741
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.