Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05622 and RBAM_033970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:07
# Commandline: needle
# -asequence dna-align/BSNT_05622___atpD.1.9828.seq
# -bsequence dna-align/RBAM_033970___atpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05622___atpD-RBAM_033970___atpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05622___atpD-RBAM_033970___atpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05622___atpD
# 2: RBAM_033970___atpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity: 1277/1423 (89.7%)
# Similarity: 1277/1423 (89.7%)
# Gaps: 2/1423 ( 0.1%)
# Score: 5789.0
#
#
#=======================================
BSNT_05622___ 1 ATGAAGAAAGGACGCGTTAGCCAGGTATTAGGACCGGTCGTCGACGTGCG 50
|||||||||||||||||.||.|||||..|.||||||||.||||||||.||
RBAM_033970__ 1 ATGAAGAAAGGACGCGTAAGTCAGGTGCTTGGACCGGTTGTCGACGTACG 50
BSNT_05622___ 51 TTTTGAAGACGGTCACTTGCCTGAAATTTATAATGCGATTAAAATTTCAC 100
|||.||.|||||.||||||||||..||||||||||||||||||.||||||
RBAM_033970__ 51 TTTCGAGGACGGCCACTTGCCTGCGATTTATAATGCGATTAAAGTTTCAC 100
BSNT_05622___ 101 AGCCAGCTGCAAGTGAAAACGAAGTAGGTATTGATTTAACGCTTGAGGTC 150
||||||||.||.|.|||||.||||||||.||.||..|||||||.|||||.
RBAM_033970__ 101 AGCCAGCTACAGGCGAAAATGAAGTAGGCATCGACCTAACGCTAGAGGTT 150
BSNT_05622___ 151 GCTCTTCATTTAGGTGATGATACAGTCCGTACAATCGCAATGGCATCTAC 200
||||||||||||||.||||||||||||||||||||.||.|||||||||||
RBAM_033970__ 151 GCTCTTCATTTAGGCGATGATACAGTCCGTACAATTGCCATGGCATCTAC 200
BSNT_05622___ 201 GGATGGTGTTCAGCGCGGTATGGAAGCTGTAGATACAGGAGCGCCAATCT 250
|||.||..||||||||||.|||||||||||.||||||||.|||||.||.|
RBAM_033970__ 201 GGACGGAATTCAGCGCGGAATGGAAGCTGTTGATACAGGTGCGCCGATTT 250
BSNT_05622___ 251 CAGTACCGGTTGGTGATGTAACACTTGGACGTGTATTTAACGTTCTCGGA 300
|.||.||.||.||||||||.||.||.|||||.|||||||||||.||.|||
RBAM_033970__ 251 CCGTTCCTGTCGGTGATGTGACTCTCGGACGCGTATTTAACGTACTGGGA 300
BSNT_05622___ 301 GAAAATATTGATTTGAATGAGCCGGTTCCTGCGGATGCGAAAAAGGATCC 350
||.||.||||||||.|||||.|||.|.|||||||||||..|||||||.||
RBAM_033970__ 301 GATAAAATTGATTTAAATGAACCGCTGCCTGCGGATGCTCAAAAGGACCC 350
BSNT_05622___ 351 GATTCACAGA-CAGGCGCCTTCATTCGATCAGCTTTCAACAGAAGTTGAA 399
|||.|||||| || ||.||||||||||||.||||||||||.||.||||||
RBAM_033970__ 351 GATCCACAGATCA-GCTCCTTCATTCGATGAGCTTTCAACTGAGGTTGAA 399
BSNT_05622___ 400 ATTCTTGAAACAGGTATTAAAGTTGTTGATTTGCTTGCTCCTTACATTAA 449
|||||||||||.||.|||||.||||||||..||||.|||||||||||.||
RBAM_033970__ 400 ATTCTTGAAACGGGAATTAAGGTTGTTGACCTGCTCGCTCCTTACATCAA 449
BSNT_05622___ 450 GGGCGGTAAAATCGGATTGTTCGGTGGTGCCGGTGTAGGTAAAACCGTAT 499
||||||||||||||||||||||||.||.|||||.||||||||||||||||
RBAM_033970__ 450 GGGCGGTAAAATCGGATTGTTCGGCGGCGCCGGCGTAGGTAAAACCGTAT 499
BSNT_05622___ 500 TAATCCAGGAATTAATCAACAACATCGCGCAAGAGCACGGCGGTATCTCT 549
||||||||||||||||||||||||||||||||||||||||||||||.||.
RBAM_033970__ 500 TAATCCAGGAATTAATCAACAACATCGCGCAAGAGCACGGCGGTATTTCC 549
BSNT_05622___ 550 GTATTCGCCGGCGTAGGAGAGCGTACTCGTGAAGGGAACGACCTTTTCTA 599
|||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_033970__ 550 GTATTCGCCGGTGTAGGAGAGCGTACTCGTGAAGGGAACGACCTTTTCTA 599
BSNT_05622___ 600 CGAAATGAGTGACTCTGGCGTAATCAACAAAACAGCCATGGTATTCGGAC 649
|||||||||.||.||.|||||.|||||.||||||||||||||.|||||||
RBAM_033970__ 600 CGAAATGAGCGATTCAGGCGTTATCAAGAAAACAGCCATGGTCTTCGGAC 649
BSNT_05622___ 650 AAATGAACGAGCCGCCGGGCGCACGTATGCGTGTTGCTTTGACAGGCCTT 699
||||||||||||||||||||||||||||||||||.||..||||.||.|||
RBAM_033970__ 650 AAATGAACGAGCCGCCGGGCGCACGTATGCGTGTAGCACTGACGGGGCTT 699
BSNT_05622___ 700 ACAATGGCTGAGCACTTCCGTGATGTACAAGGACAGGACGTACTGTTCTT 749
||||||||||||||.|||||||||..||||||||||||||||||||||||
RBAM_033970__ 700 ACAATGGCTGAGCATTTCCGTGATAAACAAGGACAGGACGTACTGTTCTT 749
BSNT_05622___ 750 CATCGATAACATTTTCCGTTTCACACAAGCGGGTTCAGAGGTTTCAGCCC 799
.||||||||||||||||||||||||||||||||||||||||||||.||.|
RBAM_033970__ 750 TATCGATAACATTTTCCGTTTCACACAAGCGGGTTCAGAGGTTTCCGCGC 799
BSNT_05622___ 800 TTCTTGGCCGTATGCCTTCAGCGGTTGGTTATCAGCCGACGCTTGCAACT 849
||||.||||||||||||||.||||||||||||||||||||||||||.||.
RBAM_033970__ 800 TTCTCGGCCGTATGCCTTCTGCGGTTGGTTATCAGCCGACGCTTGCGACA 849
BSNT_05622___ 850 GAGATGGGTCAGCTCCAAGAGCGTATCACGTCTACGAACGTTGGATCAGT 899
||.|||||||||||.|||||||||||.||||||||.||||||||.|||||
RBAM_033970__ 850 GAAATGGGTCAGCTTCAAGAGCGTATTACGTCTACAAACGTTGGTTCAGT 899
BSNT_05622___ 900 TACATCTATCCAGGCGATCTACGTGCCTGCCGATGACTACACTGACCCGG 949
|||||||||||||||||||||||||||||||||||||||.||||||||||
RBAM_033970__ 900 TACATCTATCCAGGCGATCTACGTGCCTGCCGATGACTATACTGACCCGG 949
BSNT_05622___ 950 CGCCGGCGACAACGTTCGCTCACTTGGATGCGACAACAAACCTTGAGCGT 999
|.||||||||||||||||||||||||||||||||.||.||||||||||||
RBAM_033970__ 950 CTCCGGCGACAACGTTCGCTCACTTGGATGCGACGACTAACCTTGAGCGT 999
BSNT_05622___ 1000 AAATTAACTGAAATGGGTATTTACCCTGCGGTTGATCCGTTGGCATCTAC 1049
||||||||||||||||||||.||||||||||||||||||.||||.||.||
RBAM_033970__ 1000 AAATTAACTGAAATGGGTATCTACCCTGCGGTTGATCCGCTGGCTTCCAC 1049
BSNT_05622___ 1050 ATCACGCGCCCTTGCTCCTGAAATTGTCGGAGAAGAGCATTATGCGGTTG 1099
.||.|||||.||||||||.|||||||||||||||||||||||||||||.|
RBAM_033970__ 1050 TTCCCGCGCGCTTGCTCCGGAAATTGTCGGAGAAGAGCATTATGCGGTGG 1099
BSNT_05622___ 1100 CGCGTGAAGTACAGTCAACGCTTCAGCGTTACAAAGAGCTTCAAGATATC 1149
||||||||||.||||||||||||||||||||||||||.|||||.|||||.
RBAM_033970__ 1100 CGCGTGAAGTCCAGTCAACGCTTCAGCGTTACAAAGAACTTCAGGATATT 1149
BSNT_05622___ 1150 ATTGCGATTCTCGGTATGGATGAACTAGGCGAGGAAGACAAACTTGTCGT 1199
||.|||||||||||||||||.|||.||||.||.||||||||.||||||||
RBAM_033970__ 1150 ATCGCGATTCTCGGTATGGACGAATTAGGTGAAGAAGACAAGCTTGTCGT 1199
BSNT_05622___ 1200 TCACCGCGCACGCCGTATCCAGTTCTTCCTTTCTCAGAACTTCCACGTGG 1249
||||||||||||||||||||||||||||||||||||.|||||||||||.|
RBAM_033970__ 1200 TCACCGCGCACGCCGTATCCAGTTCTTCCTTTCTCAAAACTTCCACGTAG 1249
BSNT_05622___ 1250 CTGAACAGTTCACTGGACAAAAAGGTTCTTACGTGCCTGTAAAAGAGACG 1299
||||.|||||.||.||||||||.|||||||||||||||||.|||||.|||
RBAM_033970__ 1250 CTGAGCAGTTTACGGGACAAAAGGGTTCTTACGTGCCTGTTAAAGAAACG 1299
BSNT_05622___ 1300 GTACAAGGCTTCAAAGAAATCTTAGCCGGTAAATACGACCATCTTCCAGA 1349
||||.||||||.|||||||||.|..||||||||||.|||||||||||.||
RBAM_033970__ 1300 GTACGAGGCTTTAAAGAAATCCTTTCCGGTAAATATGACCATCTTCCGGA 1349
BSNT_05622___ 1350 AGATGCGTTCCGTCTTGTAGGCCGTATCGAAGAAGTTGTTGAGAAAGCAA 1399
||||||.|||||||||||.||.||.||.||||||||..|||||||.||||
RBAM_033970__ 1350 AGATGCATTCCGTCTTGTGGGACGCATTGAAGAAGTCATTGAGAATGCAA 1399
BSNT_05622___ 1400 AAGAAATGGGTGTAGAAGTTTAA 1422
||||.||||||||||||||||||
RBAM_033970__ 1400 AAGAGATGGGTGTAGAAGTTTAA 1422
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