Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05648 and RBAM_034140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05648___ywlA.1.9828.seq
# -bsequence dna-align/RBAM_034140___ywlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05648___ywlA-RBAM_034140___ywlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05648___ywlA-RBAM_034140___ywlA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05648___ywlA
# 2: RBAM_034140___ywlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 381
# Identity: 278/381 (73.0%)
# Similarity: 278/381 (73.0%)
# Gaps: 24/381 ( 6.3%)
# Score: 957.5
#
#
#=======================================
BSNT_05648___ 1 ATGAAATACAATTATACAGTGCTGTTATCAGCATTCACG-ATGTCCGTTC 49
||||||||.|||||.||.||||||.|.||.|| ..||.| |||||.||..
RBAM_034140__ 1 ATGAAATATAATTACACCGTGCTGCTGTCGGC-GGCATGTATGTCTGTCA 49
BSNT_05648___ 50 TTTATTCAGTAATT--TATATTCATTCATTTATCATTGCCGCTCTCATCA 97
||||||| ||.|| |||.|||||..|||.||.||.||.|||.||||..
RBAM_034140__ 50 TTTATTC--TATTTTGTATGTTCATCAATTCATTATCGCGGCTTTCATTT 97
BSNT_05648___ 98 CAATGGCATTTTATTTTCTGTTTCCTTATTTGATCTTCGCACTGCCGCTT 147
|.|||||.|||||||||.||||||||||||||||.||.||||||||||||
RBAM_034140__ 98 CGATGGCGTTTTATTTTTTGTTTCCTTATTTGATTTTTGCACTGCCGCTT 147
BSNT_05648___ 148 CAAATCATGATGAATAAAAAGCCGAA-ACGGTTCAGCC-CTTTGTATCTG 195
|||..|.|..|||||||||||||||| |...||||.|| | |||||.|.
RBAM_034140__ 148 CAATACTTTCTGAATAAAAAGCCGAAGAGATTTCATCCGC--TGTATTTT 195
BSNT_05648___ 196 CTGTATTACCTTGCCGCTG-CTTTTATTGCTAACGCGATCATTTTCGGCG 244
||.||||| .||...|.|| |.||.|||||.||||.||||||.|||||..
RBAM_034140__ 196 CTTTATTA-TTTAGGGGTGTCATTCATTGCAAACGGGATCATCTTCGGTC 244
BSNT_05648___ 245 TGCTTCAGCCTTCGGGACAATCTCTGTTTCAAAATACAGCCTTCTATCTT 294
|..|.|||||.||.||.||||||||||||...|||.|||||||.|||.|.
RBAM_034140__ 245 TTTTGCAGCCGTCAGGCCAATCTCTGTTTTCTAATTCAGCCTTTTATATC 294
BSNT_05648___ 295 TTCGCTGTATTAACAGCTCTTATTTATTGGATATGGGACTCTGTTTTACT 344
||.||.||.||||||||..|.||.||||||.|||||||.||.||.||.||
RBAM_034140__ 295 TTTGCGGTTTTAACAGCCGTCATCTATTGGGTATGGGATTCCGTATTGCT 344
BSNT_05648___ 345 GCAAA---AAAA---------GGAAGCCTAA 363
||||| |||| .|||||.|||
RBAM_034140__ 345 GCAAAGACAAAATCCGGCTACAGAAGCGTAA 375
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