Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05681 and RBAM_034330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_05681___ywjF.1.9828.seq
# -bsequence dna-align/RBAM_034330___ywjF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05681___ywjF-RBAM_034330___ywjF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05681___ywjF-RBAM_034330___ywjF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05681___ywjF
# 2: RBAM_034330___ywjF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2157
# Identity: 1614/2157 (74.8%)
# Similarity: 1614/2157 (74.8%)
# Gaps: 87/2157 ( 4.0%)
# Score: 5989.0
#
#
#=======================================
BSNT_05681___ 1 ATGAGCGGCTTTCTCATCGCAAATACATTATTATTTCTGAT--------- 41
||||.||..||||||||.|.|||..| ||||.|
RBAM_034330__ 1 ATGAACGCATTTCTCATGGTAAACGC---------TCTGCTGTTTTCAGC 41
BSNT_05681___ 42 TGTAACCGCTTACGCTGTCTATTTGTTTGTGTATTTGGTCAAAACGAGAC 91
||||||||||||||||||.|||||.||.||.||..||.|||.||||||..
RBAM_034330__ 42 TGTAACCGCTTACGCTGTTTATTTATTCGTTTACCTGATCAGAACGAGGA 91
BSNT_05681___ 92 TGGCCTACATCAAGCTCGGCCAGAAAGAACAATTTGATCAACGGTTCAAG 141
|.||.||.||.|||||||||||.|..|||.||||||||.||||..|.||.
RBAM_034330__ 92 TCGCTTATATTAAGCTCGGCCAAAGGGAAGAATTTGATAAACGCCTGAAA 141
BSNT_05681___ 142 GAACGGCTTCACGACATATGGGTGAATGTATTCGGACAGAAAAAACTGCT 191
|||||.|||||..|.||||||||||||||.|||||||||||||||.||||
RBAM_034330__ 142 GAACGTCTTCAGAAGATATGGGTGAATGTGTTCGGACAGAAAAAATTGCT 191
BSNT_05681___ 192 CAAGGACAAGAAAAGCGGAATCATTCACGTCATGTTTTTCTACGGATTTA 241
.||.||.||.||.|||||.|||||.|||||..|||||||.|||||.||||
RBAM_034330__ 192 GAAAGATAAAAAGAGCGGCATCATCCACGTTCTGTTTTTTTACGGTTTTA 241
BSNT_05681___ 242 TATTGGTTCAGTTCGGAGCAATTGACTTTATCATTAAAGGACTGGCTCCC 291
||.|.|||||||||||.||||||||.|||||..|.|||||.|||..|||.
RBAM_034330__ 242 TACTCGTTCAGTTCGGCGCAATTGATTTTATTCTGAAAGGGCTGCTTCCT 291
BSNT_05681___ 292 GGCCGGAATCTGCCGCTTGGCCCGGTCTATCCCGCCTTCACCTTTTTTCA 341
|.|||..||||||||.|.||.|||.|.|||||.||.||.|||||||||||
RBAM_034330__ 292 GACCGTCATCTGCCGTTCGGTCCGCTTTATCCGGCGTTTACCTTTTTTCA 341
BSNT_05681___ 342 GGAAATTGTTACGTTTCTCATTTTAATTGCTGTTGGGTGGGCATTCTACA 391
||||||.||.||||||||.||||||||.||.||.|..|||||.||.|||.
RBAM_034330__ 342 GGAAATCGTCACGTTTCTGATTTTAATCGCCGTAGTCTGGGCGTTTTACC 391
BSNT_05681___ 392 GACGTTACATCGAAAAGCTCGTGAGGCTGAAACGCGGTTTCAAAGCCGGA 441
|.||.|||||.|||||.|||||.||.|||||||||||.||.|||||.||.
RBAM_034330__ 392 GGCGCTACATTGAAAAACTCGTCAGACTGAAACGCGGGTTTAAAGCGGGG 441
BSNT_05681___ 442 CTCGTTCTCATTTTTATCGGAGGTTTAATGCTGACCGTTCTGCTTGGGAA 491
||.||.||..|.||||||||.||..|.|||.||||.||.||.||.|||||
RBAM_034330__ 442 CTTGTCCTGCTGTTTATCGGCGGACTGATGGTGACGGTGCTTCTCGGGAA 491
BSNT_05681___ 492 CGGGATGAATCTGATTTGGCATGAGCATGGGCTTTCTTGGAGCGAGCCAA 541
||..|||||.||..|.|||||.||.|||...||.|||||||..|||||.|
RBAM_034330__ 492 CGCCATGAACCTTTTATGGCACGATCATTCTCTGTCTTGGACGGAGCCGA 541
BSNT_05681___ 542 TTGCCTCAGGTATTGCGTTTATGCTTAGCG--------GAGTCGGGAAAA 583
|.|||||....||||||.||.||||..||| |.|.|||
RBAM_034330__ 542 TCGCCTCCTCCATTGCGATTGTGCTCGGCGGTCTTTCAGCGCCGG----- 586
BSNT_05681___ 584 CAGGTGCGGCGGTGATTTTCTATATCGCATGGTGGATCCATCTTCTGTTC 633
|.|..||.||.||| ||.|||.|..||||||||.|.|||||..||||.
RBAM_034330__ 587 CGGCCGCCGCCGTG---TTTTATGTTTCATGGTGGCTTCATCTGTTGTTT 633
BSNT_05681___ 634 TTGCTTAGCTTTTTAGTGTACGTGCCTCAGTCTAAGCATGCCCATTTAAT 683
|||||.||||||||||||||||||||.||.||.||||||||.||.|||||
RBAM_034330__ 634 TTGCTCAGCTTTTTAGTGTACGTGCCGCAATCAAAGCATGCGCACTTAAT 683
BSNT_05681___ 684 CGCCGGCCCGGCAAACGTCTTTTTCAATAGAATGGAATCTGCCGGAAAAC 733
.||.||.|||||.||.||.||..|||..||..||||.||....|||||.|
RBAM_034330__ 684 TGCAGGTCCGGCGAATGTGTTCCTCAGCAGGCTGGATTCAAAAGGAAAGC 733
BSNT_05681___ 734 TTGAAAAAATTGATTTTACCGACGAAACGAAAGAAAGCTACGGAGCGGGA 783
|.||||||||.|||||.|||||.||.|||||||||||||||||.|..|||
RBAM_034330__ 734 TGGAAAAAATCGATTTCACCGATGAGACGAAAGAAAGCTACGGCGTCGGA 783
BSNT_05681___ 784 AAAATTGAGGATTTCAGGCAGTCTCAGCTGCTTGATCTGTACGCGTGTGT 833
||.|||||.||.|||.|.|..||||||||..|.||.||.|||||.||.||
RBAM_034330__ 784 AAGATTGAAGACTTCCGCCGCTCTCAGCTTGTCGACCTTTACGCCTGCGT 833
BSNT_05681___ 834 CGAGTGCGGCCGCTGTACCAATATGTGCCCTGCAACAGGCACCGGAAAAA 883
|||.||||||||||||||.||||||||.||.||..|.||.||.||.||.|
RBAM_034330__ 834 CGAATGCGGCCGCTGTACAAATATGTGTCCGGCCTCCGGTACGGGCAAGA 883
BSNT_05681___ 884 TGCTGTCTCCGATGGACTTGATTTTACGTCTCAGAGACCATCTCACGGAA 933
||||.||.|||||||||.|.||||||...||||||||||||.|.||||||
RBAM_034330__ 884 TGCTCTCGCCGATGGACCTCATTTTAAAGCTCAGAGACCATTTGACGGAA 933
BSNT_05681___ 934 AAAGGCGCTGCCGTCACCTCGCGCTCCCCATGGGTGCCCGCAGCAGCGTT 983
||||||||||||||.||.||....||.||.|||||||||||..|.|..||
RBAM_034330__ 934 AAAGGCGCTGCCGTGACGTCAAAATCTCCGTGGGTGCCCGCGCCCGTTTT 983
BSNT_05681___ 984 TCGGCATACGAGAGGC-AATCAGCTGGCTGCGGCGTCAGCGGGCAGCGGA 1032
||.|||.|||| |||| ||||||||.||.|||||.||..|.||..|.|||
RBAM_034330__ 984 TCAGCACACGA-AGGCGAATCAGCTCGCCGCGGCTTCCTCAGGGGGAGGA 1032
BSNT_05681___ 1033 TCGCAGGAAGCCGCAGCGGCGCTTGATTACAATCCAAGCTTGATCGGCGA 1082
||||..|||||.||.||.||..|.||||||||.||.|||||.||||||||
RBAM_034330__ 1033 TCGCGTGAAGCGGCCGCAGCCATCGATTACAACCCGAGCTTAATCGGCGA 1082
BSNT_05681___ 1083 CGTCATCACAGAGGAAGAAATTTGGGCATGCACCACTTGCCGAAACTGTG 1132
.||||||||.|..||.||.||||||||.|||||.||||||||.|||||||
RBAM_034330__ 1083 TGTCATCACGGCAGAGGAGATTTGGGCGTGCACGACTTGCCGCAACTGTG 1132
BSNT_05681___ 1133 AGGATCAATGCCCGGTCATGAATGAGCACGTGGATAAAATCATCGACCTC 1182
|.||||||||.||||||||||||||.|||||.||||||||.|||||.||.
RBAM_034330__ 1133 AAGATCAATGTCCGGTCATGAATGAACACGTTGATAAAATTATCGATCTG 1182
BSNT_05681___ 1183 CGCCGCTACCTCGTACTGACAGAAGGAAAAATGGACAGTGACGCCCAGCG 1232
||||||||.||.||.||.||.|||||.||.||||||||.|||||.|||||
RBAM_034330__ 1183 CGCCGCTATCTTGTGCTTACGGAAGGGAAGATGGACAGCGACGCACAGCG 1232
BSNT_05681___ 1233 CGCAATGACAAGTATTGAGCGGCAGGGGAATCCGTGGGGACTCAACCGCA 1282
.||.||||||||.|||||..|.|||||.||.||||||||..|.|||||.|
RBAM_034330__ 1233 GGCCATGACAAGCATTGAAAGACAGGGAAACCCGTGGGGCTTAAACCGGA 1282
BSNT_05681___ 1283 AGGAACGTGAAAATTGGCGTGATGAGGCGCCGGATGCTGAGATTCCGACT 1332
|.||.||.||.||.|||||.||..||| |.|||.|.|||||||||||.
RBAM_034330__ 1283 AAGAGCGGGAGAACTGGCGGGAGCAGG---CCGATACAGAGATTCCGACA 1329
BSNT_05681___ 1333 GTAAAAGAAATGAAAAAAGAAGGAAAAGAATTTGAGTACCTTTTCTGGGT 1382
||.|||||||||||||||.|||..|||||.||.||.||..|.||.|||||
RBAM_034330__ 1330 GTGAAAGAAATGAAAAAACAAGACAAAGAGTTCGACTATTTGTTTTGGGT 1379
BSNT_05681___ 1383 AGGCTCCATGGGGTCTTACGACAACAGAAGCCAGAAAATCGCAATTTCCT 1432
.|||||.|||||.||.|||||||||||.|||||.||.||.||..|.||.|
RBAM_034330__ 1380 CGGCTCAATGGGTTCCTACGACAACAGGAGCCAAAAGATTGCCGTCTCAT 1429
BSNT_05681___ 1433 TTGCCAAGCTGCTCAATCACGCGGGCGTGTCCTTCGCGATCCTCGGCAAT 1482
||||.||||||||.|||.|.||||||||.|||||.|||||.|||||||||
RBAM_034330__ 1430 TTGCAAAGCTGCTTAATGAAGCGGGCGTATCCTTTGCGATTCTCGGCAAT 1479
BSNT_05681___ 1483 AAAGAAAAAAATTCAGGAGACACGCCGCGCCGCCTCGGAAATGAATTTTT 1532
||.||||||||.|||||.||.|||||||||||..|.||.||.||.|||.|
RBAM_034330__ 1480 AAGGAAAAAAACTCAGGCGATACGCCGCGCCGTTTGGGCAACGAGTTTCT 1529
BSNT_05681___ 1533 GTTCCAAGAGCTGGCTGAGAAGAATATTTCTGAATTTGAAAAAAATGATG 1582
|||||||||||||||.||..|.||.||....||||||||||||.|.|...
RBAM_034330__ 1530 GTTCCAAGAGCTGGCGGAACACAACATCGGCGAATTTGAAAAACACGGAA 1579
BSNT_05681___ 1583 TCAAAAAAATCGTTACGATCGATCCCCATGCATACAATTTATTTAAAAAC 1632
|||||||||||||.|||||.|||||.||.||.||.|||.|.||.|||||.
RBAM_034330__ 1580 TCAAAAAAATCGTCACGATTGATCCGCACGCCTATAATATGTTCAAAAAT 1629
BSNT_05681___ 1633 GAATATCCGGATTTCGGATT------TGAAGGCGAGGTTTATCATCATAC 1676
||||||||.||||||||||| |||| ||.|||||||||||
RBAM_034330__ 1630 GAATATCCTGATTTCGGATTCCGGGCTGAA------GTCTATCATCATAC 1673
BSNT_05681___ 1677 AGAAGTGCTGGCCGAGCTTGTGAAAAACGGAAAATTAAAGCCGCAGCACC 1726
.|||.|..|.||||||||||||..|.|.||.|||.||||.||||..||||
RBAM_034330__ 1674 TGAATTATTAGCCGAGCTTGTGTCACAGGGGAAACTAAAACCGCTTCACC 1723
BSNT_05681___ 1727 CGCTTCATGAGACGATTACCTTCCATGATTCATGCTATTTGGGCCGGTAC 1776
||.|..||||.|||||||||||||||||.||.||||||||.||..|.|||
RBAM_034330__ 1724 CGGTGAATGAAACGATTACCTTCCATGACTCGTGCTATTTAGGAAGATAC 1773
BSNT_05681___ 1777 AATGAAGTCTATGATCCGCCGAGAGAGATTTTGAAAGGCATTCCGGGCGT 1826
||||||||.|||||.||||||||||.|||.||.||||.||||||||||||
RBAM_034330__ 1774 AATGAAGTGTATGAGCCGCCGAGAGCGATCTTAAAAGCCATTCCGGGCGT 1823
BSNT_05681___ 1827 GCAGCTTG-TTGAAATGGAGAGAAACCGGGAAACCGGCATGTGCTGCGGA 1875
.|| .||| ..|||||||||.|.|.|||.||||.|||.|||||||||||.
RBAM_034330__ 1824 TCA-ATTGAAGGAAATGGAGCGCAGCCGCGAAAACGGGATGTGCTGCGGC 1872
BSNT_05681___ 1876 GCTGGCGGGGGATTAATGTGGATGGAGGAAGAAACAGGCAAC-AGGATTA 1924
||.||.||.||..|.|||||||||||.|||||||| ||.|.| ||.||.|
RBAM_034330__ 1873 GCCGGGGGAGGGCTCATGTGGATGGAAGAAGAAAC-GGGAGCGAGAATCA 1921
BSNT_05681___ 1925 ACGTCGCCAGGACAGAGCAAGCGCTCGCAGTCAACCCATCGGTGATCAGT 1974
||...|||.||||.|||||.|||||..|.||||..||..||||.|||||.
RBAM_034330__ 1922 ACACGGCCCGGACTGAGCAGGCGCTTTCTGTCAGTCCGACGGTCATCAGC 1971
BSNT_05681___ 1975 TCCGGCTGTCCGTACTGTCTCACAATGCTTGGGGACGGCACAAAGGCGAA 2024
|||||.|||||.||||||||.||.|||||.||.|||||.||.||.|||||
RBAM_034330__ 1972 TCCGGATGTCCTTACTGTCTGACCATGCTCGGTGACGGTACGAAAGCGAA 2021
BSNT_05681___ 2025 GGAAGCTGAAGAC-CAAGTCAAAACGTACGACGTC-GTCGAGCTTCTGGC 2072
.|||||.|||||| |.| ||...||.||.||.||| || ||..|.||.||
RBAM_034330__ 2022 AGAAGCCGAAGACGCGA-TCGGCACTTATGATGTCAGT-GAATTGCTCGC 2069
BSNT_05681___ 2073 TCA-ATCCGTTTTAGGCGCTGATCTGAAAATGGGGGAGAAGCAATGA--- 2118
|| .||.||.||.|||||.|| |||| ||| ||
RBAM_034330__ 2070 -CATGTCTGTATTCGGCGCCGA----AAAA-----------CAA-GAGTC 2102
BSNT_05681___ 2118 ------- 2118
RBAM_034330__ 2103 TTTATAG 2109
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