Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05691 and RBAM_034380

See Amino acid alignment / Visit BSNT_05691 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:11
# Commandline: needle
#    -asequence dna-align/BSNT_05691___ywiE.1.9828.seq
#    -bsequence dna-align/RBAM_034380___ywiE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05691___ywiE-RBAM_034380___ywiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05691___ywiE-RBAM_034380___ywiE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05691___ywiE
# 2: RBAM_034380___ywiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1591
# Identity:    1170/1591 (73.5%)
# Similarity:  1170/1591 (73.5%)
# Gaps:         113/1591 ( 7.1%)
# Score: 4412.5
# 
#
#=======================================

BSNT_05691___      0 --------------------------------------------------      0
                                                                       
RBAM_034380__      1 ATGTTTACAAGCCGGAAAACAGAGGGTATACAGAGATATCGGATCAGATG     50

BSNT_05691___      1 -------------ATGCTGAAAAGGAGACTGGAATTTTTCTTTTTATATA     37
                                  |||||||||||||||||||||||||.|||||||||||
RBAM_034380__     51 GGAGAGAGTCGGGATGCTGAAAAGGAGACTGGAATTTTGCTTTTTATATA    100

BSNT_05691___     38 TGATGCTCATCGGGGCATATGTCATTTGGTTTTTTCCGGTTTCCAGGCTT     87
                     |||||||.|||||.|||||||||||.||||||||||||||||||||||||
RBAM_034380__    101 TGATGCTTATCGGAGCATATGTCATATGGTTTTTTCCGGTTTCCAGGCTT    150

BSNT_05691___     88 GAGTTTTACGGAGGATTGCTTTGCTATATAAGCATTATTTTGTTCAGCAT    137
                     ||||||||||||||..|||||||||||..|||||||||||||||||||||
RBAM_034380__    151 GAGTTTTACGGAGGGGTGCTTTGCTATGCAAGCATTATTTTGTTCAGCAT    200

BSNT_05691___    138 CTATTCATTAATTCTTGAAAACCGCACCTCGCAGCACACGCTGCTATGGA    187
                     ||||||.||||||||||||||||||||||||||||||||||||.||||||
RBAM_034380__    201 CTATTCGTTAATTCTTGAAAACCGCACCTCGCAGCACACGCTGTTATGGA    250

BSNT_05691___    188 TCCATATTCTTGTCTTTTTTCCAATCGTCGGCTACGTGTTTTATCTGTTT    237
                     |.|||||||||||.||||||||.||||.|||.|||.|.|||||.||.|||
RBAM_034380__    251 TTCATATTCTTGTGTTTTTTCCGATCGCCGGGTACTTATTTTACCTTTTT    300

BSNT_05691___    238 TCGGGACAGCTTTATGTAAAGGGAAAGCTGTTTAAGACAAAACGAATGTA    287
                     ||.||.||||||||||.|||.||.||||||||.|.|.|.|||||.|..||
RBAM_034380__    301 TCCGGCCAGCTTTATGAAAAAGGCAAGCTGTTCAGGTCGAAACGGACATA    350

BSNT_05691___    288 CAACAGGGAAAAGCTCAGGAAGCTGTTTGACAAGGAGGAAACGCCCGAAG    337
                     ||||.||||||||||.||.|.|.|.|||||.|.|||..||||.|||||..
RBAM_034380__    351 CAACCGGGAAAAGCTGAGAACGATATTTGATATGGAACAAACTCCCGACC    400

BSNT_05691___    338 TAACAGGGCTG-AAGGACAATCAAGAGAGGTTCTTTACCTATTCCATCAA    386
                     |.||.|||||| ||||| |||||..||.|.||||||...|||||.|||||
RBAM_034380__    401 TGACCGGGCTGAAAGGA-AATCAGAAGCGTTTCTTTCAATATTCAATCAA    449

BSNT_05691___    387 GGCTGCCCATATGAATATCAATACGAAAAGCAACATCAAAGTGCTGAAAA    436
                     |||..|||||||||||||||||||.|||||||...|.||.|||||.||||
RBAM_034380__    450 GGCGTCCCATATGAATATCAATACAAAAAGCAGGCTGAAGGTGCTCAAAA    499

BSNT_05691___    437 ACGGCGAAGAAACCTTCCCGGACATTTTCAAAGCGAT----GAGAAAAGC    482
                     ||||.||.|||||.||.|||||..|.||..|.|||.|    |||    ||
RBAM_034380__    500 ACGGGGACGAAACATTTCCGGAGCTGTTTGAGGCGCTCCGGGAG----GC    545

BSNT_05691___    483 TGAATCTTACATACATATTGAATACTACATGTTTAAATCAGACATGCTCG    532
                     .|..||.|..|||||||||||.||.||.|||||.||||||||||||||||
RBAM_034380__    546 CGCGTCATTTATACATATTGAGTATTATATGTTCAAATCAGACATGCTCG    595

BSNT_05691___    533 GACGCGGCATGATGGACATTATGATGGAGAAAGCGCGCCAGGGTGTCGAG    582
                     |.|.|...||||||||||||||||||||.||.|||||.||.|||||.||.
RBAM_034380__    596 GGCACAAGATGATGGACATTATGATGGAAAAGGCGCGTCAAGGTGTGGAA    645

BSNT_05691___    583 GTGAGGTTTTTATACGATGCGGCAGGAAGCATGAAGCTGGCAAGAAGAGA    632
                     |||.|||||||.|.|||.|||||.||.|||.||||||||||..|||.|||
RBAM_034380__    646 GTGCGGTTTTTGTTCGACGCGGCCGGCAGCCTGAAGCTGGCCGGAAAAGA    695

BSNT_05691___    633 TATTATGAGAATGAAACAAGCGGGGGTGGACATCGTCCCGTTTTCT-CCG    681
                     |||||..|.|.||||||..|||||.|||.||||||||||| ||||| |||
RBAM_034380__    696 TATTAAAAAACTGAAACGCGCGGGTGTGAACATCGTCCCG-TTTCTGCCG    744

BSNT_05691___    682 CTGAAATACGGGTTTTTCAACCAGAAGCTGAATTTCAGAAATCACCGGAA    731
                     |||||||||||.|||||||||||.||..|.|||||||||||||||||.||
RBAM_034380__    745 CTGAAATACGGTTTTTTCAACCAAAAATTCAATTTCAGAAATCACCGCAA    794

BSNT_05691___    732 AATCGTGATCATCGATGGGAAAACCGGTTTTGTGGGCGGATTAAATGTTG    781
                     .|||||.|||.|.||.||||||..|||||||||.|||||..|.|||||.|
RBAM_034380__    795 GATCGTCATCGTTGACGGGAAAGTCGGTTTTGTCGGCGGGCTGAATGTCG    844

BSNT_05691___    782 GGAAGGAATATATCAGCAGAGATCCGTACATCGGATTTTGGAGAGATACA    831
                     |.|||||.||||||.|||.|||.|...|..||||.||||||.|.||.||.
RBAM_034380__    845 GCAAGGAGTATATCGGCAAAGACCAAGATGTCGGCTTTTGGCGGGACACC    894

BSNT_05691___    832 CACCTGCGGCTTGAGGGGGAAATTGTGCAAACGCTCCAC-GCTATCTTTA    880
                     ||..||....|.||.||.|||||.||.||.||||||||| || ||.||||
RBAM_034380__    895 CATATGAAAGTCGAAGGAGAAATCGTTCAGACGCTCCACAGC-ATTTTTA    943

BSNT_05691___    881 TGCTGGATTGGGAATATGTCTCCAATGAAGTGCTAATTGATCAAGAGGAG    930
                     ||||.|||||||||||.||.||..||||.|||||.|||||||    |||.
RBAM_034380__    944 TGCTTGATTGGGAATACGTTTCGGATGAGGTGCTGATTGATC----GGAA    989

BSNT_05691___    931 TACA-ATAC---CCCGGTTCCCGTGGAAGGAGGAGGCATTTATCAAATTG    976
                     ..|| ||||   |||||||.|.|..|||.|.||.|||.|.||||||.|.|
RBAM_034380__    990 AGCATATACCCGCCCGGTTGCGGCAGAAAGCGGCGGCGTCTATCAAGTCG   1039

BSNT_05691___    977 TCGCAACAGGCCCTGACATGAAGGAAAGCATGAGCGACCTTTATTATGAA   1026
                     |..|.||||||||.||.||||||||..|.||||||||.||.|||||||..
RBAM_034380__   1040 TTCCGACAGGCCCCGATATGAAGGAGCGGATGAGCGATCTGTATTATGCC   1089

BSNT_05691___   1027 ATGATTTCTTCAGC----GCAGAA--ATCAATATGGATCGCCACGCCCTA   1070
                     |||||      |||    ||.|||  .||..||||||||||.|||||.||
RBAM_034380__   1090 ATGAT------AGCGGCGGCCGAATCGTCTGTATGGATCGCGACGCCTTA   1133

BSNT_05691___   1071 TTTTGTCCCCAATGAATCCATTCGCACGGCGCTAAAAGCAGCGGC-GACA   1119
                     |||.||.||.|||||..|.||.|||||.||||||||.|..||.|| |.||
RBAM_034380__   1134 TTTCGTGCCGAATGAGCCGATCCGCACAGCGCTAAAGGAGGCTGCTGCCA   1183

BSNT_05691___   1120 AAGGGGGTAGAGGTAAGGGTTATGGTGCCGGAGAAGAACGACAGCTTTTT   1169
                     .| ||.||...|||..|.||.|||||||||||.|..||.|||.|.|||||
RBAM_034380__   1184 GA-GGCGTCCGGGTGCGTGTCATGGTGCCGGAAACCAATGACGGATTTTT   1232

BSNT_05691___   1170 GACCCAATACGCGTCGAGGTCCTATTTCCCGGAGCTGCTCCTTGAGGGCA   1219
                     .|||||.||||||.||||.||.||||||||.|||||.||.|..||.||.|
RBAM_034380__   1233 AACCCAGTACGCGACGAGATCGTATTTCCCCGAGCTTCTTCGCGAAGGAA   1282

BSNT_05691___   1220 TTGAAGTGTACTCCTACCAAAAAGGCTTCATGCATCAAAAAGTCATGATC   1269
                     |.|||||.||.||.||.|||||||||||.|||||||||||.||..|.|||
RBAM_034380__   1283 TCGAAGTCTATTCTTATCAAAAAGGCTTTATGCATCAAAAGGTGCTCATC   1332

BSNT_05691___   1270 ATTGATGGCGATCTCGCCTCCGTCGGTACCGCGAATATGGACATGCGCAG   1319
                     |.|||.||..|.||||||||.|||||.||.|||||||||||||||.|.||
RBAM_034380__   1333 ACTGACGGAAACCTCGCCTCTGTCGGGACGGCGAATATGGACATGAGAAG   1382

BSNT_05691___   1320 CTTTCAGCTCAACTTTGAAGTGAATGTGTTCTTCACGGATGCCGAAGCGA   1369
                     |||||||||.|||||||||||.|||||.||.||.||.|||...||.||||
RBAM_034380__   1383 CTTTCAGCTGAACTTTGAAGTCAATGTCTTTTTTACAGATCAAGAGGCGA   1432

BSNT_05691___   1370 TCCGAACCCTTGAGGTCCATTTTGAAGAGGATATGCAGGAAAGTGAAAAG   1419
                     ||..|...|||||.|..||||.|...|||||||||.||||...||||||.
RBAM_034380__   1433 TCAAAGATCTTGAAGCGCATTATCTGGAGGATATGAAGGAGTCTGAAAAA   1482

BSNT_05691___   1420 CTCAGCCCTGTCGGCTTTTATAAAAGAGGCG-------TGGCTGACCGGA   1462
                     .|||||||.|||.|.||.|||||     |||       |||  ||..|.|
RBAM_034380__   1483 ATCAGCCCCGTCCGTTTCTATAA-----GCGCACATTATGG--GAAAGAA   1525

BSNT_05691___   1463 CAAAAGAGTCATTTGCCCGCCTGTTTTCAAGTGTTCTGTAA   1503
                     |.||.||.||.||.||.||..|.|||||..|.||..|.|||
RBAM_034380__   1526 CGAAGGAATCCTTCGCACGGTTATTTTCCGGCGTGTTATAA   1566


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