Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05736 and RBAM_034630

See Amino acid alignment / Visit BSNT_05736 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_05736___ywhE.1.9828.seq
#    -bsequence dna-align/RBAM_034630___ywhE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05736___ywhE-RBAM_034630___ywhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05736___ywhE-RBAM_034630___ywhE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05736___ywhE
# 2: RBAM_034630___ywhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2145
# Identity:    1585/2145 (73.9%)
# Similarity:  1585/2145 (73.9%)
# Gaps:         141/2145 ( 6.6%)
# Score: 5817.5
# 
#
#=======================================

BSNT_05736___      1 GTGGATGCAATGACAAA--------TAAACGGCTGAGACTGACGCTGAAA     42
                     ||||||        |||        .||||.|||.|||.|.|||.|.|||
RBAM_034630__      1 GTGGAT--------AAAGTATCTGGAAAACAGCTCAGAGTCACGTTCAAA     42

BSNT_05736___     43 ACCGTTCGCGCCTTTATCTTTTTAGGGGCTTTTGCGGC------CTTGGC     86
                     |.|.|.||.||||..||||||.| |...||..| ||||      ||.|.|
RBAM_034630__     43 ATCATCCGTGCCTGCATCTTTCT-GACACTGAT-CGGCGGAATGCTGGCC     90

BSNT_05736___     87 GGCAGCTG--------CCGTGTTTATGACTGTCATTTTGATAGCCAAATA    128
                     |||..|||        ||||           ||.|.||| .|||.||||.
RBAM_034630__     91 GGCGTCTGCTTCACATCCGT-----------TCTTCTTG-CAGCGAAATG    128

BSNT_05736___    129 CCAGGGCGCTCCCTCGGTGCAAGTGCCGCAATCCACGATTTTGTATGCGA    178
                     .|||||.||.|||||.||.|..||.||.||.||.||||||.|.|||||.|
RBAM_034630__    129 GCAGGGGGCCCCCTCCGTCCGGGTTCCTCAGTCTACGATTCTTTATGCAA    178

BSNT_05736___    179 GTGACGGCTCAAAGCTCGGGGAAACGAACTACGGCGAAAAGCGCTATTGG    228
                     .|||||||||||||||.||.||.||..|.|.|||.|||||||||||.|||
RBAM_034630__    179 ATGACGGCTCAAAGCTAGGTGAGACCGATTTCGGGGAAAAGCGCTACTGG    228

BSNT_05736___    229 GTCCCCTTAAAGGACATGAATCCGACGATCGTAAAAGCGACAGTG-----    273
                     ||.|..|||||.||.||.||||||         |.||||   |||     
RBAM_034630__    229 GTGCGGTTAAAAGATATCAATCCG---------ATAGCG---GTGCAGGC    266

BSNT_05736___    274 -GCGATT------GAAGACCAGAATTTCTACGATCATCACGGCTTTGATT    316
                      ||||||      ||.||.||.||.||.|||.||||.|||||.|||||||
RBAM_034630__    267 CGCGATTGCGGTGGAGGATCAAAACTTTTACAATCACCACGGTTTTGATT    316

BSNT_05736___    317 ATAAACGCATGGCCGGCGCGGCGCTTGCTGACCTGAAAGCATTTGCCAAG    366
                     |....||.|||||||.|||.|||||.||||||.|.||.|||.|.||||||
RBAM_034630__    317 ACCGGCGGATGGCCGCCGCCGCGCTGGCTGACATAAAGGCAATGGCCAAG    366

BSNT_05736___    367 GTTCAGGGTGCAAGCACCATCACCCAGCAATATGCCAGAAATTTATACCT    416
                     ||||||||.|||||||||||||||||||||||.||.||||||.|.|||||
RBAM_034630__    367 GTTCAGGGCGCAAGCACCATCACCCAGCAATACGCGAGAAATCTCTACCT    416

BSNT_05736___    417 TGAACACGACAAAACGTGGAAACGGAAATGGAATGAGGCGTTCTACACGA    466
                     |||.||.||.||.||.||||||||.|||||||||||.||.||.|||||||
RBAM_034630__    417 TGAGCATGATAAGACATGGAAACGTAAATGGAATGAAGCCTTTTACACGA    466

BSNT_05736___    467 TCCGTCTGGAACAAAACTATTCTAAGGACGAGATATTAGAAGGCTATTTA    516
                     ||||.||.|||||.|||||||||||..|||||||.||||||||.|||.||
RBAM_034630__    467 TCCGCCTTGAACAGAACTATTCTAAAAACGAGATTTTAGAAGGTTATGTA    516

BSNT_05736___    517 AATACGATTTACTACGGACACGGCGCCTACGGCATTGAAGCAGCTTCCCG    566
                     ||||||||.||.|||||.||||||||.||.||.||||||||.||.||.||
RBAM_034630__    517 AATACGATATATTACGGCCACGGCGCATATGGAATTGAAGCTGCCTCGCG    566

BSNT_05736___    567 CCTTTATTTCGGCAAGCATGCCAAAAACCTGACGGATGCGGAGGCGGCGC    616
                     |||.|||||||||||.||.||||||.|.||||..||||||||.||.|.||
RBAM_034630__    567 CCTGTATTTCGGCAAACACGCCAAAGATCTGAACGATGCGGAAGCCGTGC    616

BSNT_05736___    617 TTTTGGCAGGAATCCCGAAAGGCCCTTCCGGCTATTCACCGTATGTCAAT    666
                     |||||||.||.||.|||||||||||.|||||||||||.||.|||||||..
RBAM_034630__    617 TTTTGGCGGGCATACCGAAAGGCCCGTCCGGCTATTCGCCATATGTCAGC    666

BSNT_05736___    667 GAGACGAAAGCCAAGGAGCGCCAGAAAACGATTGTGCGGATGATGGAAAA    716
                     ||.|.|||.|||||..||||||||.||||.|||.|.||.||||||  |..
RBAM_034630__    667 GAAAAGAAGGCCAAACAGCGCCAGGAAACCATTCTCCGAATGATG--ATC    714

BSNT_05736___    717 G--CAACAGATGATCAGCCAAAAGAAA--GCGGATGAATTGATCAAGGAA    762
                     |  |||.|.||||||  .|||||||||  |||   |||..|.|.|||.||
RBAM_034630__    715 GGCCAAAAAATGATC--TCAAAAGAAAAGGCG---GAAAGGCTTAAGAAA    759

BSNT_05736___    763 ---CCTCTTTCCTATCAGCCTTTGAATAAACAAGTTTCCAA-------GA    802
                        ||.|||.||||||||||..|||| |||||      .||       ||
RBAM_034630__    760 ACGCCGCTTGCCTATCAGCCGCTGAA-AAACA------GAACCGCGGCGA    802

BSNT_05736___    803 GAAAGGCTCCTTATTTCTACGACAATGCGATGAGAGAGCTGGAGAAAAAG    852
                     .||.|||.||||||||.|||||..|||||||||.|||..|.|||||||||
RBAM_034630__    803 AAACGGCGCCTTATTTTTACGATGATGCGATGAAAGAAATCGAGAAAAAG    852

BSNT_05736___    853 CTCGGCATGACACGGGAGCAAATTGAAACGAGCGGGTTAAACGTCTATAC    902
                     |||||||||||.||.||.||..|.|.|||||||||.||....||.|||||
RBAM_034630__    853 CTCGGCATGACGCGCGAACAGCTCGCAACGAGCGGATTGCGTGTTTATAC    902

BSNT_05736___    903 AACGGTAGATAAACGGATGCAGCGCATCGCCGAGGAGACCATT-----AC    947
                     ||||.|.|||||.||.||||||||.||.||   |||.|.||.|     ||
RBAM_034630__    903 AACGCTTGATAAGCGCATGCAGCGGATTGC---GGAAAACACTGTGGCAC    949

BSNT_05736___    948 CGAAACGGT---TAACGCGGGCTCTGACATTCAAGTCGGGTTTTCAGCCA    994
                       |.|||.|   ||   |.||||||||||||||.|||||.|||||.||.|
RBAM_034630__    950 --ATACGATCCGTA---CCGGCTCTGACATTCAGGTCGGCTTTTCCGCGA    994

BSNT_05736___    995 TTGATCCCCGC-ACCGGAAACGTTCTCGCCCTTGTCGGCGGCAGGGATTA   1043
                     ||||| ||.|| ||.||...|||.||.||.|||.|||||||..|.||.||
RBAM_034630__    995 TTGAT-CCGGCAACAGGGCGCGTGCTTGCGCTTCTCGGCGGACGTGACTA   1043

BSNT_05736___   1044 TCAAAAAAGCCCGTTTGACCGGACGACACAGGCGAAGCGCCAGCCTGCTT   1093
                     ..||||||||||||||||||||.|||||||||||||.||.|||||.||||
RBAM_034630__   1044 CGAAAAAAGCCCGTTTGACCGGGCGACACAGGCGAAACGGCAGCCCGCTT   1093

BSNT_05736___   1094 CGACGATCAAGCCATTGCTGTACTATAAAGCGATTCAGAGTGGATTTACG   1143
                     |.|||||||||||..|..|||||||.|||||||||||.||.||.|||||.
RBAM_034630__   1094 CCACGATCAAGCCGCTTTTGTACTACAAAGCGATTCAAAGCGGCTTTACA   1143

BSNT_05736___   1144 CCAGTCACTTTGATGAAAAGCGAAGAAACCGAGTTTCAAATTGATGCAAA   1193
                     ||.|||||..|||||||||||||||..||.|||||.||.|||||.|..||
RBAM_034630__   1144 CCGGTCACGCTGATGAAAAGCGAAGCCACAGAGTTCCAGATTGACGACAA   1193

BSNT_05736___   1194 GGGAGAAACCTATTCTCCAAGCAACTATAACGGATACTACGCCAACAAGC   1243
                     .|||||.||.||||||||||||||.||.|||||.|||||||||||.||.|
RBAM_034630__   1194 CGGAGATACTTATTCTCCAAGCAATTACAACGGCTACTACGCCAATAAAC   1243

BSNT_05736___   1244 CGATTACGCTTCTGCAGGCGCTGGCGCTTTCCGACAATATTTACGCTGTG   1293
                     ||||||||||.||.||||||||.|||.|.||.|||||.|||||.||.|||
RBAM_034630__   1244 CGATTACGCTGCTTCAGGCGCTTGCGTTATCAGACAACATTTATGCCGTG   1293

BSNT_05736___   1294 AAAACGCATCTTTTTCTCGGCACGAACAAACTTGTAAAGACGGCAAAGGA   1343
                     ||.||.|||||.||||||||||.|||.||.||.||...|.||||||||||
RBAM_034630__   1294 AAGACCCATCTCTTTCTCGGCATGAATAAGCTCGTGTCGGCGGCAAAGGA   1343

BSNT_05736___   1344 ATTCGGCATTACCGCCCATCTTCAAG-CACTGCCGTCCCTGGCACTCGGC   1392
                     |||||||||.|.||..||| ||.||| |.||.|||||.|||||.|||||.
RBAM_034630__   1344 ATTCGGCATCAGCGAACAT-TTAAAGCCTCTTCCGTCTCTGGCGCTCGGA   1392

BSNT_05736___   1393 ACCGAACCCGTGCGTCCGATTGAGATGGTCAACGCCTATGCCATGCTCGC   1442
                     ||.|||||||||||.||||||||||||||.||.|||||.||.||||||||
RBAM_034630__   1393 ACTGAACCCGTGCGCCCGATTGAGATGGTTAATGCCTACGCGATGCTCGC   1442

BSNT_05736___   1443 AAATGGCGGAAAGAAAATCGAACCGACTTTTATTTCAAGGGTAACGGACG   1492
                     |||.||.|||||..|||||...||..|.|||||..|||..||.|||||..
RBAM_034630__   1443 AAACGGGGGAAAACAAATCACCCCTTCCTTTATCACAAAAGTGACGGATA   1492

BSNT_05736___   1493 CAGCCGGCCACGTGCTGTACGAAAACCCG------AATCAGCATAAACAG   1536
                     |.||||||.||.|..||||.|||.|.|||      .|||||      |||
RBAM_034630__   1493 CCGCCGGCAACATCTTGTATGAACAGCCGCGCGGACATCAG------CAG   1536

BSNT_05736___   1537 GTGCTTGATGAAAAAGCCGCTTTTGTCACAGCGAGTATGATGACAGGCAT   1586
                     ..|||||||.||||||||||||||||.||.|||||.||||||||.|||||
RBAM_034630__   1537 ACGCTTGATAAAAAAGCCGCTTTTGTGACGGCGAGCATGATGACGGGCAT   1586

BSNT_05736___   1587 GTTTGATACCGATTTAAATGGATATACGTCGGTTACGGGACGAACGATAG   1636
                     |||||||...||||||||.||.|||||.||.||.||||||||.||.||..
RBAM_034630__   1587 GTTTGATCAGGATTTAAACGGCTATACTTCCGTCACGGGACGCACCATTT   1636

BSNT_05736___   1637 CCAACCGCCTGACAAGAACGTATGCCGGAAAATCAGGAACCACCAGCGCA   1686
                     |..||||.|||||..||||.||||.|||.||||||||.||.||.||||||
RBAM_034630__   1637 CTGACCGGCTGACCCGAACCTATGGCGGTAAATCAGGCACGACGAGCGCA   1686

BSNT_05736___   1687 GACAGCTGGATGATCGGCTTCAATCCGAAACTGGCCGCAGGTGTTTGGAC   1736
                     ||||||||||||||||||||.||.|||...||.|||||.|||||.|||||
RBAM_034630__   1687 GACAGCTGGATGATCGGCTTTAACCCGGCTCTTGCCGCCGGTGTATGGAC   1736

BSNT_05736___   1737 CGGCTATGACAAAAACAGCACCATCGACTCGGTCGAAGAAAAAAGCTATG   1786
                     .|||||||||||||.||||||.||.||.||.||.||.|||||||||||||
RBAM_034630__   1737 AGGCTATGACAAAAGCAGCACGATTGATTCAGTAGAGGAAAAAAGCTATG   1786

BSNT_05736___   1787 CTAAAACCATTTGGGCGGACTTCATGGAGAACGCGCTCAAGGGCGATCCG   1836
                     |.||.||.||||||||||||||.||||||||.||||||.|.||.||.|||
RBAM_034630__   1787 CGAAGACGATTTGGGCGGACTTTATGGAGAAGGCGCTCGAAGGAGAACCG   1836

BSNT_05736___   1837 GAAACCGCGTTCAAGCCGCCAAAAGGCGTAACCGGTGTGTACATTGATCC   1886
                     ||||..|||.|.||.|||||.||.|||||.||.||.||.||.||.|||||
RBAM_034630__   1837 GAAATAGCGCTTAAACCGCCGAAGGGCGTCACGGGCGTCTATATCGATCC   1886

BSNT_05736___   1887 GGAAACAGGCTACTCATCAGGTCCCGGCTGTGCCGCTAAGCATTACACAT   1936
                     .|...|.||||||.|.||.||.||||||||.|||||.||||||||.||.|
RBAM_034630__   1887 CGCTTCCGGCTACACTTCGGGACCCGGCTGCGCCGCAAAGCATTATACGT   1936

BSNT_05736___   1937 ATTTTGTGAAAGGGACAGAACCCGCAAACGTGTGCTACGGGGCAGAACCC   1986
                     ||||..|...|||.||.||.|||||..|.|||||||||||..|.|||||.
RBAM_034630__   1937 ATTTCATCGCAGGCACTGAGCCCGCGGATGTGTGCTACGGACCGGAACCT   1986

BSNT_05736___   1987 GCAAAACAAACAAAAG--ACCGGCTTCCATC--CAAAGAAAAGCCTGCTT   2032
                     .|.||| |||.|||||  ||..||..||..|  |||||||      || |
RBAM_034630__   1987 TCTAAA-AAAGAAAAGGAACACGCCCCCGCCCGCAAAGAA------GC-T   2028

BSNT_05736___   2033 CCGAG-AAAAAGTGGTGGGACAAATGGCTGGGGCGACATCATTGA   2076
                     |||.| ||||||||||||||.||.|||||.||...|.|..|.|||
RBAM_034630__   2029 CCGCGCAAAAAGTGGTGGGATAAGTGGCTCGGCAAAAAAGACTGA   2073


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.