Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05742 and RBAM_034680

See Amino acid alignment / Visit BSNT_05742 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence dna-align/BSNT_05742___ywhA.1.9828.seq
#    -bsequence dna-align/RBAM_034680___ywhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05742___ywhA-RBAM_034680___ywhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05742___ywhA-RBAM_034680___ywhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05742___ywhA
# 2: RBAM_034680___ywhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 451
# Identity:     303/451 (67.2%)
# Similarity:   303/451 (67.2%)
# Gaps:          62/451 (13.7%)
# Score: 1012.5
# 
#
#=======================================

BSNT_05742___      1 ATGGACCATGACAAACTGGAAGCAAATTTGCTGGATCACGCACTTACAAA     50
                     |||.|.||.||.|.|.|..||||||||.|.||||||.||||.||.||.||
RBAM_034680__      1 ATGAAGCACGATATATTACAAGCAAATGTACTGGATTACGCGCTCACGAA     50

BSNT_05742___     51 ATATTTGAAAAGCACGAAGCAATTAGATGAAGCCACCGTTCCGAAACACG    100
                     ||||||.||.||||||||..|..|.|||||.||.||..|||||||    |
RBAM_034680__     51 ATATTTAAAGAGCACGAAAAAGCTTGATGAGGCGACAATTCCGAA----G     96

BSNT_05742___    101 ----TGAATAATGTAAGAGGGTTTATTCTGCGGATCATATACAGACATGG    146
                         |.||.|||.|.|||||.||||||||..||||.||.|||.|.||.||
RBAM_034680__     97 AGTATAAACAATATCAGAGGATTTATTCTCAGGATTATTTACCGGCACGG    146

BSNT_05742___    147 GAGCTGCACCATAAAGGATATTTTGAAGGAGGTCACACTGTCTCCCTCTG    196
                     .|..|||||.||.||.|||||.|||.||||.||||||.|.||.||.||.|
RBAM_034680__    147 CACGTGCACGATTAAAGATATATTGCAGGAAGTCACATTATCGCCTTCAG    196

BSNT_05742___    197 CCACGACCACAGCTCTGAATCATTTAGAGCAGGAAGGGTTT-ATTGAGAG    245
                     |||||||.||.|||||||||||||||||..|.| ||||||| .|.||.||
RBAM_034680__    197 CCACGACAACCGCTCTGAATCATTTAGAAAAAG-AGGGTTTCGTGGAAAG    245

BSNT_05742___    246 ATCCAGAAATAACAATGACCGCCGCACTGTATGGATTACGCTTTCTGAAT    295
                     .||.|||||||||.|.|||||.|||||.||||||||.||||||||.||||
RBAM_034680__    246 GTCGAGAAATAACGAAGACCGACGCACGGTATGGATGACGCTTTCCGAAT    295

BSNT_05742___    296 CGGGCCGGGGA------GCGGC--TGAACAAATGATCGAAAACCGCCAGC    337
                     |      ||||      |||||  ||  ||||||||.||||||||.|||.
RBAM_034680__    296 C------GGGAAAAATGGCGGCCATG--CAAATGATTGAAAACCGGCAGA    337

BSNT_05742___    338 AGCTGATTGACG-GCATGTTTGAACGTTTAACAGCCGAAGAGAAAG-AGA    385
                     .|||.||||||| || ||||.|||...||.||.|..||||| |||| |.|
RBAM_034680__    338 TGCTCATTGACGAGC-TGTTCGAAGCATTGACTGAAGAAGA-AAAGAATA    385

BSNT_05742___    386 CGTTCTTGGCGATTATTGCGAAGCTGGCTC-----AATAG----------    420
                     |.||.||                |.|.|||     ||.||          
RBAM_034680__    386 CCTTTTT----------------CAGCCTCGTTGAAAAAGTAATGAAATA    419

BSNT_05742___    420 -    420
                      
RBAM_034680__    420 A    420


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.