Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05761 and RBAM_034830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:15
# Commandline: needle
# -asequence dna-align/BSNT_05761___ywfK.1.9828.seq
# -bsequence dna-align/RBAM_034830___ywfK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05761___ywfK-RBAM_034830___ywfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05761___ywfK-RBAM_034830___ywfK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05761___ywfK
# 2: RBAM_034830___ywfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 916
# Identity: 697/916 (76.1%)
# Similarity: 697/916 (76.1%)
# Gaps: 32/916 ( 3.5%)
# Score: 2521.5
#
#
#=======================================
BSNT_05761___ 1 TTGTATTACGACGTGCTGAAAACGTTTATAGCGGTGGTAGAAGAAAAAAA 50
||||||||.|..|..||||||||.||.||.||.||.||.|||||||||||
RBAM_034830__ 1 TTGTATTATGGGGAACTGAAAACATTCATTGCCGTCGTGGAAGAAAAAAA 50
BSNT_05761___ 51 CTTCACAAAAGCGGCGGAAAAGCTGATGATCTCCCAGCCCAGCGTCAGTC 100
|||.|||||.||||||.|.|||||||||||.||.|||||.|||||.||.|
RBAM_034830__ 51 CTTTACAAAGGCGGCGCAGAAGCTGATGATTTCTCAGCCGAGCGTTAGCC 100
BSNT_05761___ 101 TGCATATCAAAAATCTTGAGAAAGAATTTCAAACGGCTCTT-CTGAACAG 149
|.||.||.|||||.||.|||||||||||||||||.|| ||| ||||||.|
RBAM_034830__ 101 TTCACATTAAAAACCTGGAGAAAGAATTTCAAACCGC-CTTGCTGAACCG 149
BSNT_05761___ 150 GTCGCCAAAACACTTTACGACAACGCCGACAGGAGACATTTTATATCAAA 199
.||.||.||.|||||||||||.||||||||.||.||||||.|.|||||..
RBAM_034830__ 150 CTCTCCGAAGCACTTTACGACTACGCCGACGGGGGACATTCTCTATCAGC 199
BSNT_05761___ 200 GAGCAAAGCAAATGGTGTTTCTCTACGAACAAGCCAAGGCTGAAATCTAT 249
|.||.|||||.|||||.|||.|.||||||||.||.||..|.|||||.||.
RBAM_034830__ 200 GCGCCAAGCAGATGGTCTTTTTGTACGAACAGGCGAAATCCGAAATTTAC 249
BSNT_05761___ 250 GCGCATCATCACTATGTGAAGGGTGAA-TTGAAAATAGCTGCAAGCTTTA 298
||.||||||||.|||||.||.|| ||| .|.|||||.||.||.|||||||
RBAM_034830__ 250 GCCCATCATCATTATGTCAAAGG-GAAGCTCAAAATCGCCGCGAGCTTTA 298
BSNT_05761___ 299 CAATCGGTGAGTATATTCTTCCGCCGCTATTGGCCCAGCTGCAAAAGCTG 348
|.|||||.||.||||||||.||||||||..|.||..||||.||..|...|
RBAM_034830__ 299 CCATCGGCGAATATATTCTGCCGCCGCTTCTCGCAAAGCTTCATGACGAG 348
BSNT_05761___ 349 TATCCAGAGCTGAATCTAGATGTCATGATTGGCAATACAGAGGAGGTCAG 398
|||||.||||||||.||.||.||||||||.||.||.||.|||||||||||
RBAM_034830__ 349 TATCCCGAGCTGAACCTGGACGTCATGATCGGAAACACGGAGGAGGTCAG 398
BSNT_05761___ 399 CG-AGCGTGTGCGGATGCTTCAGGCTGATATCGGGCTGATTGAAGGACAT 447
|| |||| ||.|||||||||||.||.||||||||..|.||||||||.|||
RBAM_034830__ 399 CGAAGCG-GTTCGGATGCTTCAAGCCGATATCGGATTAATTGAAGGGCAT 447
BSNT_05761___ 448 AC----AAACGAGAATGAGCTGGAAATTGAACCGTTCATGGAGGATGAAA 493
|| ||| ||.|||||.||.|||.|.|||||.||||||||||||.
RBAM_034830__ 448 ACGGGGAAA----AACGAGCTCGACATTCAGCCGTTTATGGAGGATGAAT 493
BSNT_05761___ 494 TGTGCATTGCCGCTCCAAATCAG-CATCCGCTCGCCGGGCGGAAAGAGAT 542
|||||||||||||.||.|| |.| ||.|||||||||||..|.|||.|.||
RBAM_034830__ 494 TGTGCATTGCCGCACCGAA-CGGACACCCGCTCGCCGGCAGAAAAAACAT 542
BSNT_05761___ 543 TTCGATCAG-CGATTTGCAGAACGAAGCGTGGGTGACAAGAGAGAAAGGC 591
..|| .|.| |||.|||||.||..|||||||||||||.||.|||||.||.
RBAM_034830__ 543 CCCG-GCTGCCGAATTGCAAAATCAAGCGTGGGTGACGAGGGAGAAGGGT 591
BSNT_05761___ 592 TCCGGGACGAGAGAATATCTCGATCATGTAC-TCAGTTCAAATGGACTTC 640
||.||.|||||.||||||.|.||.||.||.| ||| .|||||.|||||.|
RBAM_034830__ 592 TCGGGAACGAGGGAATATTTAGACCACGTCCTTCA-ATCAAACGGACTGC 640
BSNT_05761___ 641 GGCCGAAATCAATGTTCACCATCAGCAGCAATCAAGGTGTAAAGGAAGCG 690
||||||||||.|||.|.||.|||||||||||.||.||.||.||.|||||.
RBAM_034830__ 641 GGCCGAAATCCATGATGACGATCAGCAGCAACCAGGGCGTCAAAGAAGCC 690
BSNT_05761___ 691 GTGATTAACGGCATGGGACTTTCGGTTCTATCCAGAAGCGTACTGCATAA 740
|||||.|.|||.|||||.|||||.|||||.||.|.||||||.|||||.||
RBAM_034830__ 691 GTGATCAGCGGAATGGGCCTTTCCGTTCTGTCAAAAAGCGTGCTGCAAAA 740
BSNT_05761___ 741 GGATTTGATCCACCGCGAAATCTCAATTCTGCATATTAAAGATTTCTCGT 790
||||.||.|.|||.||...||.||..|.||..|.||.||||..|||||.|
RBAM_034830__ 741 GGATCTGCTTCACGGCAGCATTTCCGTGCTTGAGATAAAAGGATTCTCCT 790
BSNT_05761___ 791 TAAAGCGCAAGCTGTCTTACATTCATTCTCCTCTCATGGAGAATACAAAA 840
||||.||.||.||||||..|||.||.|||.|..|.||||||||.||||||
RBAM_034830__ 791 TAAAACGGAAACTGTCTATCATCCAATCTTCCATTATGGAGAACACAAAA 840
BSNT_05761___ 841 AATAAAGAAATTTTTATTACG----ATGCTGAAAAG-CAATTATCAATCA 885
||.||||||||.||.|| || || ||||||| ||||| |||||||
RBAM_034830__ 841 AACAAAGAAATCTTCAT--CGCTCTAT--TGAAAAGCCAATT-TCAATCA 885
BSNT_05761___ 886 -CAGCTGCTGAAATGA 900
||...|| |.|.|||
RBAM_034830__ 886 TCACAAGC-GGAGTGA 900
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