Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05763 and RBAM_034850

See Amino acid alignment / Visit BSNT_05763 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence dna-align/BSNT_05763___eutD.1.9828.seq
#    -bsequence dna-align/RBAM_034850___eutD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05763___eutD-RBAM_034850___eutD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05763___eutD-RBAM_034850___eutD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05763___eutD
# 2: RBAM_034850___eutD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity:     822/973 (84.5%)
# Similarity:   822/973 (84.5%)
# Gaps:           2/973 ( 0.2%)
# Score: 3494.0
# 
#
#=======================================

BSNT_05763___      1 GTGGCAGATTTATTTTCAACAGTGCAAGAAAAAGTAGCTGGAAAAGACGT     50
                     |||||||||||||||.|||.|||.|||||||||||.||.||||||||.||
RBAM_034850__      1 GTGGCAGATTTATTTACAAAAGTACAAGAAAAAGTCGCAGGAAAAGATGT     50

BSNT_05763___     51 TAAAATTGTATTTCCTGAAGGCTTAGACGAGCGTATTTTAGAAGCGGTCA    100
                     .|||||.||||||||||||||.||.|||||.|||||..|.|..|||||||
RBAM_034850__     51 GAAAATCGTATTTCCTGAAGGGTTGGACGAACGTATCCTGGTTGCGGTCA    100

BSNT_05763___    101 GCAAGCTT-GCAGGAAACAAAGTGCTGAATCCGATTGTGATCGGCAATGA    149
                     .||| ||| ||.||.|||||.||..|.||.|||||.||..||||||||.|
RBAM_034850__    101 ACAA-CTTGGCGGGCAACAAGGTATTAAAGCCGATCGTAGTCGGCAATAA    149

BSNT_05763___    150 AAATGAGATCCAAGCAAAAGCAAAAGAATTGAACCTTACGCTGGACGGCG    199
                     |.|.||.||.|||||||||||.||||||||.||.||||||||.|||||||
RBAM_034850__    150 AGAAGACATTCAAGCAAAAGCGAAAGAATTAAATCTTACGCTTGACGGCG    199

BSNT_05763___    200 TTAAGATTTATGATCCTCATACATATGAAGGCATGGAAGACCTTGTACAA    249
                     |..|.||||.|||.||.|||||||||||||||||||||||.||.||.||.
RBAM_034850__    200 TGGACATTTTTGACCCGCATACATATGAAGGCATGGAAGAACTCGTTCAG    249

BSNT_05763___    250 GCATTCGTAGAACGCCGCAAAGGCAAAGCGACAGAAGAACAGGCTCGCAA    299
                     ||.|||||||||||||||||||||||||||||.|||||||||||.|||||
RBAM_034850__    250 GCTTTCGTAGAACGCCGCAAAGGCAAAGCGACGGAAGAACAGGCCCGCAA    299

BSNT_05763___    300 AGCGTTATTAGACGAGAACTACTTCGGTACAATGCTGGTGTATAAAGGAC    349
                     |||.||..|.|||||.|||||.|||||.||.|||||.|||||.|||||.|
RBAM_034850__    300 AGCTTTGCTGGACGAAAACTATTTCGGCACGATGCTTGTGTACAAAGGTC    349

BSNT_05763___    350 TTGCAGACGGACTTGTAAGCGGAGCTGCTCACTCAACTGCTGACACTGTC    399
                     |.||||||||||||||.|||||||||||.||.||.||||||||.||.||.
RBAM_034850__    350 TCGCAGACGGACTTGTCAGCGGAGCTGCACATTCTACTGCTGATACGGTG    399

BSNT_05763___    400 CGCCCGGCTCTTCAAATCATCAAAACAAAAGAAGGCGTGAAAAAGACTTC    449
                     |||||.||.||.||||||||||||||||||||||||||||||||.||.||
RBAM_034850__    400 CGCCCTGCACTGCAAATCATCAAAACAAAAGAAGGCGTGAAAAAAACATC    449

BSNT_05763___    450 CGGCGTGTTCATCATGGCTCGCGGAGAAGAGCAATACGTATTCGCAGATT    499
                     .|||||.|||||||||||.|||||.||.|||||.||.||.|||||.||||
RBAM_034850__    450 AGGCGTCTTCATCATGGCCCGCGGTGACGAGCAGTATGTGTTCGCTGATT    499

BSNT_05763___    500 GCGCGATCAACATTGCGCCTGACAGCCAAGATCTTGCCGAGATTGCGATC    549
                     ||||||||||||||||.|||||||||||.||.||||||||.||.||.||.
RBAM_034850__    500 GCGCGATCAACATTGCTCCTGACAGCCAGGACCTTGCCGAAATCGCCATT    549

BSNT_05763___    550 GAAAGTGCCAATACGGCAAAAATGTTCGACATTGAGCCTCGCGTGGCAAT    599
                     |||||.|||||||||||..|||||||.||||||||.||.|||||.||.||
RBAM_034850__    550 GAAAGCGCCAATACGGCTCAAATGTTTGACATTGACCCGCGCGTTGCCAT    599

BSNT_05763___    600 GCTCAGCTTCTCTACAAAAGGCTCAGCAAAATCTGATGAAACAGAAAAAG    649
                     |||||||||||||||||||||.||.||.|||||.||.||.||.||.||||
RBAM_034850__    600 GCTCAGCTTCTCTACAAAAGGATCGGCGAAATCAGACGAGACGGACAAAG    649

BSNT_05763___    650 TAGCGGATGCAGTGAAAATCGCGAAAGAAAAAGCGCCTGAACTGACACTT    699
                     |.||.||.||.||||||||.|||||.||||||||||||||.||.||.|||
RBAM_034850__    650 TGGCTGAAGCCGTGAAAATTGCGAAGGAAAAAGCGCCTGAGCTTACGCTT    699

BSNT_05763___    700 GACGGCGAATTCCAATTTGATGCTGCATTTGTTCCATCTGTAGCTGAGAA    749
                     |||||||||||||||||.||.|||||||||||.||.|||||.||.|||||
RBAM_034850__    700 GACGGCGAATTCCAATTCGACGCTGCATTTGTGCCGTCTGTCGCGGAGAA    749

BSNT_05763___    750 AAAAGCGCCGGATTCCGAAATCAAAGGGGACGCTAACGTATTCGTATTCC    799
                     ||||||||||||.|||||.||.|||||.|||||.||.|||||.|||||||
RBAM_034850__    750 AAAAGCGCCGGACTCCGACATTAAAGGAGACGCGAATGTATTTGTATTCC    799

BSNT_05763___    800 CAAGCCTTGAAGCAGGAAACATCGGCTATAAAATCGCTCAGCGTTTGGGC    849
                     ||||||||||||||||||||||||||||.||||||||||||||.||.|||
RBAM_034850__    800 CAAGCCTTGAAGCAGGAAACATCGGCTACAAAATCGCTCAGCGCTTAGGC    849

BSNT_05763___    850 AACTTTGAAGCGGTAGGTCCAATCCTGCAAGGTTTAAATATGCCTGTAAA    899
                     ..||||||||||||.||.||.||.||||||||.|||||||||||||||||
RBAM_034850__    850 GGCTTTGAAGCGGTCGGACCGATTCTGCAAGGATTAAATATGCCTGTAAA    899

BSNT_05763___    900 CGACCTTTCAAGAGGATGTAACGCTGAAGATGTTTACAATCTCGCATTAA    949
                     |||.|||||.|||||||||||.||.|||||.||.||||||||.||.||||
RBAM_034850__    900 CGATCTTTCTAGAGGATGTAATGCGGAAGACGTCTACAATCTTGCGTTAA    949

BSNT_05763___    950 TTACAGCGGCGCAAGCACTGTAA    972
                     ||||.||.||.|||||.||||||
RBAM_034850__    950 TTACGGCTGCTCAAGCGCTGTAA    972


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