Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05768 and RBAM_034880

See Amino acid alignment / Visit BSNT_05768 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:16
# Commandline: needle
#    -asequence dna-align/BSNT_05768___ywfG.1.9828.seq
#    -bsequence dna-align/RBAM_034880___ywfG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05768___ywfG-RBAM_034880___ywfG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05768___ywfG-RBAM_034880___ywfG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05768___ywfG
# 2: RBAM_034880___ywfG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1209
# Identity:     967/1209 (80.0%)
# Similarity:   967/1209 (80.0%)
# Gaps:          18/1209 ( 1.5%)
# Score: 3863.5
# 
#
#=======================================

BSNT_05768___      1 ATGGAAATAACACCGTCCGATGTCATCAAGACACTTCCAAGGCAAGAGTT     50
                     ||||||||.|.|||||||||.|||||||||||||||||.|..||.||.||
RBAM_034880__      1 ATGGAAATCATACCGTCCGACGTCATCAAGACACTTCCGAAACAGGAATT     50

BSNT_05768___     51 TTCTCTCGTTTTTCAAAAGGTAAAGGAAATGGAAAAAACGGGGGCCCATA    100
                     |||.||||||||||||||||||||.||..||||.||||||||.|||||.|
RBAM_034880__     51 TTCGCTCGTTTTTCAAAAGGTAAAAGAGTTGGAGAAAACGGGAGCCCAGA    100

BSNT_05768___    101 TCATTAATCTCGGACAGGGGAACCCTGACCTTCCCACTCCGCCGCATATT    150
                     |||||||||||||.||||||||.||.||.||.|||||.|||||||||||.
RBAM_034880__    101 TCATTAATCTCGGGCAGGGGAATCCCGATCTCCCCACACCGCCGCATATC    150

BSNT_05768___    151 GTGGAGGCTTTGCGGGAGGCTTCTCTGAATCCTTCGTTTCATGGATACGG    200
                     ||.||..|.||||||||||||.|.|||||||||||||.|||.||||||||
RBAM_034880__    151 GTTGAAACATTGCGGGAGGCTGCGCTGAATCCTTCGTATCACGGATACGG    200

BSNT_05768___    201 CCCTTTCAGGGGCTATCCTTTTTTAAAGGAAGCGATCGCTGCTTTCTATA    250
                     |||.|||||.||||||||.|||.|.||.|||||.|||||.|..||.|||.
RBAM_034880__    201 CCCGTTCAGAGGCTATCCGTTTCTGAAAGAAGCCATCGCGGAATTTTATG    250

BSNT_05768___    251 AAAGGGAATACGGAGTGACAATCAATCCTGAAACGGAGGTCGCGCTTTTC    300
                     |.||.||.|||||.||..|..|||||||.||.||.||.||||||||.|||
RBAM_034880__    251 AGAGAGAGTACGGGGTATCGGTCAATCCGGAGACAGAAGTCGCGCTGTTC    300

BSNT_05768___    301 GGAGGCGGGAAAGCCGGTTTGTATGTGTTGACACAATGCCTGCTCAATCC    350
                     ||.||.||||||||.||||||||.||.|||||.|||||||||||.|||||
RBAM_034880__    301 GGCGGAGGGAAAGCTGGTTTGTACGTTTTGACGCAATGCCTGCTGAATCC    350

BSNT_05768___    351 GGGAGACATCGCTTTAGTCCCGAATCCAGGCTACCCTGAATATTTATCAG    400
                     .||.||.|||||.|||||||||||.||.|||||||||||.||||||||.|
RBAM_034880__    351 CGGCGATATCGCCTTAGTCCCGAACCCCGGCTACCCTGAGTATTTATCGG    400

BSNT_05768___    401 GGATTACGATGGCGCGAGCTGAGCTTTACGAAATGCCGCTGTATGAAGAA    450
                     |.|||||.|||||..||||.|||||..|.||.||||||||..||...|||
RBAM_034880__    401 GCATTACAATGGCCAGAGCGGAGCTGCATGAGATGCCGCTTCATCCGGAA    450

BSNT_05768___    451 AATGGCTATCTGCCGGATTTTGAAAAGATTGATCCAGCCGTGCTGGAAAA    500
                     ||.||||||.|||||||||||||...|||||||||.|||||.|||.||||
RBAM_034880__    451 AACGGCTATTTGCCGGATTTTGAGCGGATTGATCCCGCCGTCCTGAAAAA    500

BSNT_05768___    501 AGCGAAGCTTATGTTTTTAAACTATCCGAACAATCCCACTGGAGCTGTGG    550
                     |||.|||||.||||||||.||.||.|||||.||.||.||.||.||....|
RBAM_034880__    501 AGCCAAGCTGATGTTTTTGAATTACCCGAATAACCCGACGGGCGCGACTG    550

BSNT_05768___    551 CTGATGCGGCTTTTTATGCAAGAGCTGCTGCTTTTGCGAAAGAGCATAAC    600
                     |.|||..|||.|||||||.||.|||.||.||.|||||.|||.|.|||.||
RBAM_034880__    551 CAGATCAGGCGTTTTATGAAAAAGCGGCAGCGTTTGCAAAAAAACATGAC    600

BSNT_05768___    601 ATCCATTTGATTCATGATTTTGCATACGGAGCGTTTGAATTCGATCAAAA    650
                     |||||..|.|||||.||||||||||||||.|||||.|||||.|||||.||
RBAM_034880__    601 ATCCACCTTATTCACGATTTTGCATACGGCGCGTTCGAATTTGATCAGAA    650

BSNT_05768___    651 ACCGGCCAGTTTTCTTGAGGCAGAGGATGCCAAAATTGTCGGAGCAGAGC    700
                     .||||||||.||||||.||||..|.||.||.||||..|||||.||.||||
RBAM_034880__    651 CCCGGCCAGCTTTCTTCAGGCGAAAGAAGCGAAAACGGTCGGCGCGGAGC    700

BSNT_05768___    701 TTTATTCATTTTCAAAAACATTTAACATGGCCGGCTGGAGAATGGCGTTT    750
                     |||||||||||||.|||||.||.||.|||||.||||||||||||||.|||
RBAM_034880__    701 TTTATTCATTTTCGAAAACCTTCAATATGGCAGGCTGGAGAATGGCATTT    750

BSNT_05768___    751 GCGGTTGGGAACGAAAGGATCATTCAGGCCGTCAATGAATTTCAGGATCA    800
                     ||.||.|||||.||.|..|||||||||||.||||||||.|||||||||||
RBAM_034880__    751 GCCGTGGGGAATGAGAAAATCATTCAGGCGGTCAATGAGTTTCAGGATCA    800

BSNT_05768___    801 TGTATTTGTCGGCATGTTCGGCGGGCTGCAGCA---GGCAGCGAGTGCGG    847
                     .||.||.|||||||||||||||||.||.|||||   |||||||   ||||
RBAM_034880__    801 CGTCTTCGTCGGCATGTTCGGCGGCCTTCAGCAGGCGGCAGCG---GCGG    847

BSNT_05768___    848 CGCTTTCTGGAGATCCGGAGCATACGGAATCGT-TGAAACGAATTTATAA    896
                     ||||.||.|||.||||.|||||||||| |.||| ||||.||.|..|||||
RBAM_034880__    848 CGCTGTCAGGAAATCCTGAGCATACGG-AGCGTCTGAAGCGCACATATAA    896

BSNT_05768___    897 GGAACGAATTGACTTTTTTACGGCGCTTTGTGAAAAGGAATTGGGCTGGA    946
                     .|||||.|||||||||||.||||||.|.||||||||||||||.|||||||
RBAM_034880__    897 AGAACGGATTGACTTTTTCACGGCGTTATGTGAAAAGGAATTAGGCTGGA    946

BSNT_05768___    947 AGATGGAAAAGCCAAAAGGAACCTTTTACGTATGGGCTGAAATTCCGAAT    996
                     ..||.|||||.||.|||||.||.|||||.|||||||||||||||||||||
RBAM_034880__    947 GCATTGAAAAACCGAAAGGGACTTTTTATGTATGGGCTGAAATTCCGAAT    996

BSNT_05768___    997 ACGTTTGAGACATCTCACCAATTTTCCGATTACTTGCTGGAGCATGCCCA   1046
                     ...||.|||.|.||.|||||.|||||.||.||..||||||||||||||||
RBAM_034880__    997 GAATTCGAGTCTTCACACCAGTTTTCGGACTATCTGCTGGAGCATGCCCA   1046

BSNT_05768___   1047 TGTCGTAGTCACACCGGGCGAAATTTTTGGAAGCAACGGAAAAAGGCATG   1096
                     |||.||.||.||.||.|||||.|||||.||.|||..||||||..|..|||
RBAM_034880__   1047 TGTTGTCGTGACGCCCGGCGAGATTTTCGGCAGCGGCGGAAAGCGTTATG   1096

BSNT_05768___   1097 TCAGAATTTCAATGGTGTCGAAGCAGGAGGATCTGCGGGAATTTGTCACG   1146
                     |||||||.|||||||||.|.|||||||..|||.|..|||||||.||...|
RBAM_034880__   1097 TCAGAATATCAATGGTGGCCAAGCAGGGCGATTTAAGGGAATTCGTGCTG   1146

BSNT_05768___   1147 CGGATTCAAAAGCTGAACCTG-----CCGTTCGGGTCATTACAAGAAACA   1191
                     ||||||||||||||    |.|     ||.||| ..|||||||||||||||
RBAM_034880__   1147 CGGATTCAAAAGCT----CGGTTTGTCCTTTC-CTTCATTACAAGAAACA   1191

BSNT_05768___   1192 TCCCGCTAA   1200
                     |||||||.|
RBAM_034880__   1192 TCCCGCTGA   1200


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