Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05771 and RBAM_034900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:16
# Commandline: needle
# -asequence dna-align/BSNT_05771___ywfE.1.9828.seq
# -bsequence dna-align/RBAM_034900___bacD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05771___ywfE-RBAM_034900___bacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05771___ywfE-RBAM_034900___bacD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05771___ywfE
# 2: RBAM_034900___bacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1424
# Identity: 1166/1424 (81.9%)
# Similarity: 1166/1424 (81.9%)
# Gaps: 10/1424 ( 0.7%)
# Score: 4795.0
#
#
#=======================================
BSNT_05771___ 1 ATGGAGAGAAAAACAGTATTGGTCATCGCTGATCTTGGAGGCTGCCCGCC 50
|||||||||||||||||||||||.||||||||.|||||.||.||||||||
RBAM_034900__ 1 ATGGAGAGAAAAACAGTATTGGTTATCGCTGACCTTGGGGGATGCCCGCC 50
BSNT_05771___ 51 GCACATGTTTTATAAAAGCGCTGCTGAAAAATATAACCTGGTCAGCTTTA 100
|||.||||||||.||||||||.||.||||||||.|||||.||||||||||
RBAM_034900__ 51 GCATATGTTTTACAAAAGCGCAGCCGAAAAATACAACCTCGTCAGCTTTA 100
BSNT_05771___ 101 TTCCAAGACCTTTTGCAATTACAGCCTCCCATGCAGCATTGATTGAAAAA 150
||||.|||||||||||||||||||||||.|||||.|||||.|||||||||
RBAM_034900__ 101 TTCCGAGACCTTTTGCAATTACAGCCTCTCATGCGGCATTAATTGAAAAA 150
BSNT_05771___ 151 TACTCGGTCGCGGTCATAAAAGATAAAGACTATTTTAAGAGTTTAGCTGA 200
||||||||||||||||||||||||||||||||||||||||||.|.|||||
RBAM_034900__ 151 TACTCGGTCGCGGTCATAAAAGATAAAGACTATTTTAAGAGTCTGGCTGA 200
BSNT_05771___ 201 TTTTGAGCATCCTGATTCCATTTATTGGGCGCATGAGGATCATAACAAGC 250
||||||||||||.|||||.|||||.|||||.|||||.||||||.||||.|
RBAM_034900__ 201 TTTTGAGCATCCCGATTCGATTTACTGGGCTCATGAAGATCATGACAAAC 250
BSNT_05771___ 251 CTGAGGAAGAGGTCGTCGAGCAAATCGTCAAGGTTGCCGAAATGTTTGGG 300
||||||||||.||.|||||..|||||||||||||.||||..|||||.|.|
RBAM_034900__ 251 CTGAGGAAGAAGTAGTCGAAGAAATCGTCAAGGTGGCCGGCATGTTCGCG 300
BSNT_05771___ 301 GCGGATGCCATCACAACAAACAATGAATTATTCATTGCTCCGATGGCGAA 350
|..||.|||||.||.||.|||||||||.|.||.||.|||||||||||.||
RBAM_034900__ 301 GTTGACGCCATTACGACCAACAATGAACTGTTTATCGCTCCGATGGCAAA 350
BSNT_05771___ 351 AGCCTGTGAACGTCTGGGCCTGAGAGGTGCCGGCGTGCAGGCAGCCGAAA 400
|||.|||||||||||.||||||.|.||.||.|||||.|||||.||.||||
RBAM_034900__ 351 AGCGTGTGAACGTCTCGGCCTGCGGGGAGCGGGCGTACAGGCCGCTGAAA 400
BSNT_05771___ 401 ATGCCAGAGATAAAAATAAAATGAGGGACGCTTTTAATAAGGCCGGAGTC 450
||||||||||||||||.||||||||.|.||||||.||...||||||.|||
RBAM_034900__ 401 ATGCCAGAGATAAAAACAAAATGAGAGCCGCTTTCAACCGGGCCGGCGTC 450
BSNT_05771___ 451 AAATCGATCAAAAACAAACGAGTCACAACTCTTGAAGATTTCCGTGCTGC 500
||.||.||||||||||.|||.||.||.||..|.|||||||||||.||.||
RBAM_034900__ 451 AAGTCTATCAAAAACAGACGGGTGACGACGTTGGAAGATTTCCGCGCCGC 500
BSNT_05771___ 501 TCTTGAAGAGATCGGCACACCTCTTATCTTAAAGCCTACATACTTAGCGA 550
.|||.|.||.|||||.||.||.||.||..|.|||||||||||..|.||||
RBAM_034900__ 501 GCTTCAGGAAATCGGAACGCCGCTCATTCTGAAGCCTACATATCTGGCGA 550
BSNT_05771___ 551 GTTCAATCGGTGTAACGCTGATTACGGACACTGAGACGGCAGAAGATGAA 600
|.||.|||||.||.|||||.||.|..||.|..||.||||||||||..|||
RBAM_034900__ 551 GCTCCATCGGCGTGACGCTCATCAAAGAGAGGGAAACGGCAGAAGCCGAA 600
BSNT_05771___ 601 TTTAACAGAGTCAATGACTATCTGAAATCAATTAACGTGCCAAAGGCGGT 650
|||||||||||||||||.||.|||||.||.||||||||.||.||.|||||
RBAM_034900__ 601 TTTAACAGAGTCAATGAATACCTGAAGTCGATTAACGTACCGAAAGCGGT 650
BSNT_05771___ 651 TACGTTTGAAGCGCCGTTTATCGCTGAAGAATTTTTACAGGGTGAGTACG 700
.|||||||||||||||||||||||.|||||||||||.|||||.|||||.|
RBAM_034900__ 651 CACGTTTGAAGCGCCGTTTATCGCGGAAGAATTTTTGCAGGGCGAGTATG 700
BSNT_05771___ 701 GAGACTGGTATCAAACAGAAGGGTACTCCGACTATATCAGTATAGAAGGC 750
..||||||||..|||||...||.||.||||||||||||||.|||||||||
RBAM_034900__ 701 ACGACTGGTACGAAACAAGCGGTTATTCCGACTATATCAGCATAGAAGGC 750
BSNT_05771___ 751 ATCATGGCTGACGGTGAGTATTTCCCGATCGCCATTCATGATAAAACGCC 800
||||||||.|||||.||.||.|||||..||||.||||||||||||||.||
RBAM_034900__ 751 ATCATGGCCGACGGAGAATACTTCCCTGTCGCAATTCATGATAAAACACC 800
BSNT_05771___ 801 GCAAATCGGGTTTACAGAGACATCCCACATTACGCCGTCCATTCTGGATG 850
|||||||||.||.||.||||||||.||.||||||||||||||.|||||||
RBAM_034900__ 801 GCAAATCGGATTCACGGAGACATCGCATATTACGCCGTCCATCCTGGATG 850
BSNT_05771___ 851 AAGAGGCAAAAAAGAAAATTGTCGAAGCTGCCAAAAAGGCAAATGAAGGG 900
|.||.||.||...||||||.||||||||.|||||||||||.||||||||.
RBAM_034900__ 851 ATGACGCGAAGCGGAAAATCGTCGAAGCAGCCAAAAAGGCGAATGAAGGA 900
BSNT_05771___ 901 CTTGGCCTGCAAAATTGCGCAACACATACAGAGATCAAGCTAATGAAAAA 950
||.|||||..||||.||||||||||||||||||||.||..||||||||||
RBAM_034900__ 901 CTCGGCCTCGAAAACTGCGCAACACATACAGAGATTAAATTAATGAAAAA 950
BSNT_05771___ 951 CAGAGAACCGGGTTTAATAGAGTCGGCAGCCAGATTCGCAGGCTGGAATA 1000
|.|.|||.|.||..|.||.||.||.||.||..||||.||.||||||||.|
RBAM_034900__ 951 CCGGGAAGCCGGACTGATTGAATCAGCGGCACGATTTGCGGGCTGGAACA 1000
BSNT_05771___ 1001 TGATTCCTAATATTAAAAAGGTCTTTGGCCTTGATATGGCGCAATTATTA 1050
|||||||.|||||||||||||||||.|||.|.|||||||||||..|.|||
RBAM_034900__ 1001 TGATTCCGAATATTAAAAAGGTCTTCGGCGTCGATATGGCGCAGCTGTTA 1050
BSNT_05771___ 1051 TTAGATGTCCTCTGTTTCGGAAAAGACGCCGATCTGCCGGACGGATTATT 1100
||.|||||.|||||||||||||||||.||||||||||||.|.||||||||
RBAM_034900__ 1051 TTGGATGTTCTCTGTTTCGGAAAAGAAGCCGATCTGCCGAAAGGATTATT 1100
BSNT_05771___ 1101 GGATCAAGAGCCTTATTATGTTGCCGACTGCCATTTGTACCCGCAGCATT 1150
|||.||.|||||.|..|||||.|||||||||||.|||||.||.|||||||
RBAM_034900__ 1101 GGAGCAGGAGCCATGCTATGTCGCCGACTGCCACTTGTATCCTCAGCATT 1150
BSNT_05771___ 1151 TCAAACAAAATGGCCAGATTCCAGAAACCGCTGAGGATTTGGTCATTG-A 1199
|||||.|.||.||||||.|.||.||.||.||||..|||||.||||||| |
RBAM_034900__ 1151 TCAAAGAGAACGGCCAGCTGCCTGAGACGGCTGTCGATTTCGTCATTGAA 1200
BSNT_05771___ 1200 AGCGATCGATATTCCGGACGGGCTTTTAAAAGGGGATACTGAAATCGTTT 1249
||| ||.||.|||||.|||||..|.|||||.||.||.||.||||||||||
RBAM_034900__ 1201 AGC-ATTGACATTCCCGACGGCGTCTTAAAGGGAGACACCGAAATCGTTT 1249
BSNT_05771___ 1250 CATTTTCAGCCGCAGCACCAGGC----ACTTCAGTTGATTTGACATTGTT 1295
|.||.||.||.|| |.|||| ||.||.||.|||.||....||||
RBAM_034900__ 1250 CTTTCTCGGCGGC----CGAGGCGGGTACATCCGTGGATCTGCGGCTGTT 1295
BSNT_05771___ 1296 TGAAGCTTTCAATTCCATTGCTGCATTTGAACTGAAAGGCAGTAATTCAC 1345
.|||||.|||||...||||||.||.||.||.||||||||.||.|||||..
RBAM_034900__ 1296 CGAAGCGTTCAACAGCATTGCGGCGTTCGAGCTGAAAGGAAGCAATTCGG 1345
BSNT_05771___ 1346 AGGATGTGGCTGAATCAATCAGACAAATTCAGCAGCATGCAAAGCTGACG 1395
..||.|||||.||||||||||.|||||||||||||||.||.||||||||.
RBAM_034900__ 1346 GTGACGTGGCCGAATCAATCAAACAAATTCAGCAGCAGGCGAAGCTGACT 1395
BSNT_05771___ 1396 GCAAAGTATGTGCTGCCAGTATGA 1419
||||||||||.|.|.||.||||||
RBAM_034900__ 1396 GCAAAGTATGCGTTACCGGTATGA 1419
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