Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05783 and RBAM_034990

See Amino acid alignment / Visit BSNT_05783 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:17
# Commandline: needle
#    -asequence dna-align/BSNT_05783___rocG.1.9828.seq
#    -bsequence dna-align/RBAM_034990___rocG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05783___rocG-RBAM_034990___rocG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05783___rocG-RBAM_034990___rocG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05783___rocG
# 2: RBAM_034990___rocG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity:    1031/1303 (79.1%)
# Similarity:  1031/1303 (79.1%)
# Gaps:          44/1303 ( 3.4%)
# Score: 4116.5
# 
#
#=======================================

BSNT_05783___      1 ATGTCAGC--------------AAAGCAAGTCTC-GAAAGATGAAGAAAA     35
                     ||||||||              |||||||   || |||||||||||||||
RBAM_034990__      1 ATGTCAGCCAACCCGCTTTCTAAAAGCAA---TCAGAAAGATGAAGAAAA     47

BSNT_05783___     36 AGAAGCTCTTAACTTATTTCTGTCTACCCAAACAATCATTAAGGAAGCCC     85
                     |||||.||||||.||.||..||||.||.|||.|.|||||.||.||.||||
RBAM_034990__     48 AGAAGTTCTTAATTTGTTCTTGTCAACACAATCGATCATAAAAGAGGCCC     97

BSNT_05783___     86 TTCGGAAGCTGGGTTATCCGGGAGATATGTATGAACTCATGAAAGAGCCG    135
                     |.||.||.|||||.||.||.|...|||||||||||.|.||||||||||||
RBAM_034990__     98 TGCGCAAACTGGGGTACCCTGACAATATGTATGAATTGATGAAAGAGCCG    147

BSNT_05783___    136 CAGAGAATGC------TCACTGTCCGCATTCCGGTCAAAATGGACAATGG    179
                           ||||      |.||.||||||||.||.|||||||||||||||||
RBAM_034990__    148 ------ATGCGGCTTTTAACCGTCCGCATCCCTGTCAAAATGGACAATGG    191

BSNT_05783___    180 GAGCGTCA----AAGTGTTCACAGGCTACCGGTCACAGCACAATGATGCT    225
                         .|||    |.||.|||||.||||||||.||||||||.|||||.||.
RBAM_034990__    192 ----CTCAGTACAGGTTTTCACGGGCTACCGCTCACAGCATAATGACGCA    237

BSNT_05783___    226 GTCGGTCCGACAAAGGGGGGCGTTCGCTTCCATCCAGAAGTTAATGAAGA    275
                     |||||.||||||||.||||||||.||.||.|||||.|||||.|.||||||
RBAM_034990__    238 GTCGGCCCGACAAAAGGGGGCGTGCGGTTTCATCCGGAAGTCAGTGAAGA    287

BSNT_05783___    276 GGAAGTAAAGGCATTATCCATTTGGATGACGCTCAAATGCGGGATTGCCA    325
                     .||.||.|||||..|.|||||.||||||||..|.||||||||.||..|.|
RBAM_034990__    288 AGAGGTTAAGGCGCTTTCCATCTGGATGACTTTAAAATGCGGCATCACAA    337

BSNT_05783___    326 ATCTTCCTTACGGCGGCGGGAAGGGCGGTATAATTTGTGATCCGCGGACA    375
                     |||||||||||||.|||||.||.|||||.||.||.||||||||||||||.
RBAM_034990__    338 ATCTTCCTTACGGGGGCGGAAAAGGCGGCATCATCTGTGATCCGCGGACG    387

BSNT_05783___    376 ATGTCATTTGGAGAACTGGAAAGGCTGAGCAGGGGGTATGTCCGTGCCAT    425
                     ||||||||.|||||.||||||.||||||||.|.||.|||||.|||||.||
RBAM_034990__    388 ATGTCATTCGGAGAGCTGGAACGGCTGAGCCGCGGATATGTGCGTGCGAT    437

BSNT_05783___    426 CAGCCAGATCGTCGGTCCGACAAAGGATATTCCAGCTCCCGATGTGTACA    475
                     |||||||||||||||||||||||||||||||||.||||||||.||.||.|
RBAM_034990__    438 CAGCCAGATCGTCGGTCCGACAAAGGATATTCCGGCTCCCGACGTATATA    487

BSNT_05783___    476 CCAATTCGCAGATTATGGCGTGGATGATGGATGAGTACAGCCGGCTGCGG    525
                     ||||.||||||||||||||.|||||||||||.||.||||||||.|||.|.
RBAM_034990__    488 CCAACTCGCAGATTATGGCATGGATGATGGACGAATACAGCCGCCTGAGA    537

BSNT_05783___    526 GAATTCGATTCTCCGGGCTTTATTACAGGTAAACCGCTTGTTTTGGGAGG    575
                     |||||.|||||.|||||.||.|||||.||.||||||.|.|||.|.||.||
RBAM_034990__    538 GAATTTGATTCACCGGGATTCATTACGGGCAAACCGATCGTTCTCGGCGG    587

BSNT_05783___    576 ATCGCAAGGACGGGAAACGGCGACTGCACAGGGCGTCACGATTTGTATTG    625
                     .||.||.||.||||||||||||||.||.||.|||||||||||||||||||
RBAM_034990__    588 TTCACAGGGGCGGGAAACGGCGACCGCGCAAGGCGTCACGATTTGTATTG    637

BSNT_05783___    626 AAGAGGCGGTGAAGAAAAAAGGGAT--CAAGCTGCAAAACGCGCGCATCA    673
                     |.||.||.||.||||||||||||||  ||  .||.||||.|||||.||||
RBAM_034990__    638 AGGAAGCCGTTAAGAAAAAAGGGATTCCA--TTGGAAAATGCGCGGATCA    685

BSNT_05783___    674 TCATACAGGGCTTTGGAAACGCGGGTAGCTTCCTGGCTAAATTCATGCAC    723
                     ||||.|||||.||.|||||.|||||.|||||.||.||||||||.|||||.
RBAM_034990__    686 TCATTCAGGGGTTCGGAAATGCGGGGAGCTTTCTCGCTAAATTTATGCAT    735

BSNT_05783___    724 GATGCGGGCGCGAAGGTGATCGGGATTTCTGATGCCAATGGCGGGCTCTA    773
                     ||.||.|||||.|||||||||||.||.||.||.|||.|.||||...|.||
RBAM_034990__    736 GACGCCGGCGCCAAGGTGATCGGCATCTCAGACGCCCACGGCGCTTTGTA    785

BSNT_05783___    774 CAACCCAGACGGCCTTGATATCCCTTATTTGCTCGATAAACGGGACAGCT    823
                     ..||||.|||||||||||.||...|||..||||.|||||.||||||||||
RBAM_034990__    786 TGACCCTGACGGCCTTGACATTGATTACCTGCTGGATAAGCGGGACAGCT    835

BSNT_05783___    824 TCGGTATGGTCACCAATTTATTTACTGACGTCATCACAAATGAGGAGCTG    873
                     |.||.|.|||.||.|||.|.||..|.||.|||||.||.||...|||||||
RBAM_034990__    836 TTGGCACGGTGACGAATCTCTTCTCGGATGTCATAACGAACAGGGAGCTG    885

BSNT_05783___    874 CTTGAAAAGGATTGCGATATTTTAGTGCCTGCCGCGATCTCCAATCAAAT    923
                     ||.||||||||.||.||||||.|.|||||.|||||.|||||||||||.||
RBAM_034990__    886 CTGGAAAAGGACTGTGATATTCTCGTGCCCGCCGCAATCTCCAATCAGAT    935

BSNT_05783___    924 CACAGCCAAAAACGCACATAACATTCAGGCGTCAATCGTCGTTGAAGCGG    973
                     .||.||..|||||||.|||.|||||.|.||.||||||.|.||.||.||||
RBAM_034990__    936 TACGGCTGAAAACGCCCATCACATTAAAGCCTCAATCATTGTGGAGGCGG    985

BSNT_05783___    974 CGAACGGCCCGACAACCATTGATGCCACTAAGATCCTGAATGAAAGAGGC   1023
                     |.||||||||||||||.||.||||||||.||.||.|||||||||||||||
RBAM_034990__    986 CAAACGGCCCGACAACGATAGATGCCACGAAAATTCTGAATGAAAGAGGC   1035

BSNT_05783___   1024 GTGCTGCTTGTGCCGGATATCCTGGCGAGTGCCGGCGGCGTCACGGTTTC   1073
                     |||||.||.|||||||||||..||||.||.|||||||||||.|||||.||
RBAM_034990__   1036 GTGCTTCTCGTGCCGGATATTTTGGCAAGCGCCGGCGGCGTGACGGTGTC   1085

BSNT_05783___   1074 TTATTTTGAATGGGTGCAAAACAACCAAGGATATTATTGGTCGGAAGAAG   1123
                     |||||||||||||||||||||.||.|||||.|.|||.|||||.||.||.|
RBAM_034990__   1086 TTATTTTGAATGGGTGCAAAATAATCAAGGCTTTTACTGGTCTGAGGAGG   1135

BSNT_05783___   1124 AGGTTGCAGAAAAACTGAGAAGCGTCATGGTCAGCTCGTTCGAAACAATT   1173
                     |.||.||.|.|||||||.|.|||||||||||.|..|||||.|||.|.|||
RBAM_034990__   1136 AAGTCGCCGGAAAACTGCGCAGCGTCATGGTGAATTCGTTTGAATCCATT   1185

BSNT_05783___   1174 TATCAAACAGCGGCA-ACACATAAAGTGGATATGCGTTTGGCGGCTTACA   1222
                     |||||.||||| ||| ||.||.|||||.||||||||||||||.||.||.|
RBAM_034990__   1186 TATCAGACAGC-GCATACCCACAAAGTCGATATGCGTTTGGCCGCCTATA   1234

BSNT_05783___   1223 TGACGGGCATCAGAAAATCGGCAGAAGCATCGCGTTTCCGCGGATGGGTG   1272
                     ||||.|||||||||||.|||||.|||||..|.|||||||||||.|||||.
RBAM_034990__   1235 TGACAGGCATCAGAAAGTCGGCTGAAGCGGCCCGTTTCCGCGGCTGGGTA   1284

BSNT_05783___   1273 TAA   1275
                     |||
RBAM_034990__   1285 TAA   1287


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