Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05790 and RBAM_035080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:17
# Commandline: needle
# -asequence dna-align/BSNT_05790___spsJ.1.9828.seq
# -bsequence dna-align/RBAM_035080___spsJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05790___spsJ-RBAM_035080___spsJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05790___spsJ-RBAM_035080___spsJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05790___spsJ
# 2: RBAM_035080___spsJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity: 750/974 (77.0%)
# Similarity: 750/974 (77.0%)
# Gaps: 52/974 ( 5.3%)
# Score: 2876.0
#
#
#=======================================
BSNT_05790___ 1 ATGGCAAAATCATATTTAATTACAGGCGGAGCCGGCTTCATCGGGCTCAC 50
|||.||||||||||||||||||||||.||.|||||.||.|||||.||.||
RBAM_035080__ 1 ATGCCAAAATCATATTTAATTACAGGGGGCGCCGGATTTATCGGCCTTAC 50
BSNT_05790___ 51 GTTTACAAAGCTCATGCTGAGGGAAACGGATGCGCGCATTACCGTTTTAG 100
.|||||||||.|.|||||||..||||||||.||||..||||||||..|.|
RBAM_035080__ 51 CTTTACAAAGATGATGCTGAAAGAAACGGACGCGCAGATTACCGTCCTGG 100
BSNT_05790___ 101 ATAAACTGACGTACGCCAGCCACCCGGAGGAAATGGAAAAATTAAAGCAA 150
||||.||.|||||.||.|||...|||...|||||.|||...||.||..|.
RBAM_035080__ 101 ATAATCTCACGTATGCAAGCAGGCCGCTTGAAATAGAAGCCTTGAAAAAG 150
BSNT_05790___ 151 AACAGCCGTTTTCGCTTTGTGAAAGGGGACATCAGCGTTC-----AGGAG 195
|||.|||||||.||.|||.|.|||||.||||| ||| |.|||
RBAM_035080__ 151 AACGGCCGTTTCCGTTTTATCAAAGGTGACAT-----TTCTGAAAAAGAG 195
BSNT_05790___ 196 GATATCGACCGCGCGTTT-----GATGAGACCTACGATGGCGTCATTCAC 240
||.||.|||...|..||| .||| ||.||.|..||||||||.
RBAM_035080__ 196 GACATTGACAAAGTCTTTTCCCAAATG-----TATGACGCTGTCATTCAT 240
BSNT_05790___ 241 TTCGCAGCAGAATCGCATGTGGACAGAAGCATTTCCCAAGCAGAGCCGTT 290
||.||.||.|||||.|||||||||||||||||....||.|||||||||||
RBAM_035080__ 241 TTTGCGGCTGAATCCCATGTGGACAGAAGCATAAATCAGGCAGAGCCGTT 290
BSNT_05790___ 291 TATCACCACAAATGTCATGGGGACATACCGATTGGCGGAAGCGGTCTTGA 340
||||||.||||||||.|||||.|||||||||.|||||||.|||||.||..
RBAM_035080__ 291 TATCACAACAAATGTGATGGGCACATACCGACTGGCGGACGCGGTGTTAC 340
BSNT_05790___ 341 AAGGAAAAGCCAAGAAGCTGATTCATATTTCAACAGATGAGGTATACGGG 390
|.|||||||||...|.|||||||||.|||||.|||||||||||.|||||.
RBAM_035080__ 341 AGGGAAAAGCCGGCAGGCTGATTCACATTTCCACAGATGAGGTGTACGGA 390
BSNT_05790___ 391 GATTTAAAAG----CGGATGATCCCGCGTTTACAGAAACGACGCCGCTTT 436
||||| | |||||||||||||.||||||||.|||||||||||||
RBAM_035080__ 391 GATTT----GGCGCCGGATGATCCCGCTTTTACAGAGACGACGCCGCTTT 436
BSNT_05790___ 437 CTCCTAATAACCCATACTCAGCCAGCAAAGCAAGCTCTGATTTGCTCGTG 486
||||.||.||.||.||.||.||||||||.||||||||.||..|||||||.
RBAM_035080__ 437 CTCCGAACAATCCGTATTCGGCCAGCAAGGCAAGCTCAGACCTGCTCGTC 486
BSNT_05790___ 487 TTGTCTTATGTGAAAACCCACAAGCTTCCGGCCATCATTACACGATGCAG 536
.||||||||||||.||||||.||||||||.||||||||||||.|.|||||
RBAM_035080__ 487 ATGTCTTATGTGAGAACCCATAAGCTTCCTGCCATCATTACAAGGTGCAG 536
BSNT_05790___ 537 CAACAATTACGGACCTTATCAGCA-CAGCGAAAAAATGATTCCGACGATT 585
||||||||||||.||.||.||||| || |||.||||||||||||||.|||
RBAM_035080__ 537 CAACAATTACGGGCCGTACCAGCATCA-CGAGAAAATGATTCCGACCATT 585
BSNT_05790___ 586 ATCCGTCATGC--GAAGCAGGGCCTGCCTGTTCCGCTGTATGGCGATGGA 633
|||.|.||||| .|| |.|||..|||.|||||||||||.|||||.||.
RBAM_035080__ 586 ATCAGGCATGCCGTAA--ACGGCACGCCGGTTCCGCTGTACGGCGACGGG 633
BSNT_05790___ 634 CTCCAGATCCGAGACTGGCTGTTTGCGGAGGATCATTGCCGCGCGATCAA 683
.|.||||||.||||||||||||||||.||.||||||||||||||.||.||
RBAM_035080__ 634 ATGCAGATCAGAGACTGGCTGTTTGCCGAAGATCATTGCCGCGCCATTAA 683
BSNT_05790___ 684 GCTGATTTTAGAAAAAGGGACCGACGGCGAGGTGTATAACATCGGCGGCG 733
|||..|..|.||||||||.||...|||.||..|.||.||.||||||||.|
RBAM_035080__ 684 GCTCGTGCTGGAAAAAGGAACACTCGGTGACATTTACAATATCGGCGGAG 733
BSNT_05790___ 734 GAAATGAACGCACGAATAAAGAGCTGGCGAGTGTCATTT----TGAAGCA 779
||||||||||.||||||||||||||.|| ||||||| |||||.|
RBAM_035080__ 734 GAAATGAACGGACGAATAAAGAGCTTGC----GTCATTTATCATGAAGGA 779
BSNT_05790___ 780 TCTGGGCTGT-GAGGAATTGTTCGCCCACGTGGAAGACCGAAAAGGGCAT 828
.||.|| ||| ||||||..|||.||.||.||.||||||.|||||||||||
RBAM_035080__ 780 GCTCGG-TGTCGAGGAACGGTTTGCTCATGTCGAAGACAGAAAAGGGCAT 828
BSNT_05790___ 829 GACCGGCGCTATGCGATCAATGCATCAAAGCTGAAAAACGAACTGGGCTG 878
|||||.||.||.||.||||||||.||||||||||||||.||.|||||.||
RBAM_035080__ 829 GACCGCCGTTACGCCATCAATGCTTCAAAGCTGAAAAATGAGCTGGGATG 878
BSNT_05790___ 879 GCGGCAGGAAGTGACGTTTGAAGAAGGCATTGCG-CGTACGATTCAGTGG 927
|||||||||.||.||.||||||||||| |.||.| .|.||.||||..|||
RBAM_035080__ 879 GCGGCAGGACGTCACATTTGAAGAAGG-AATGAGAAGAACCATTCGCTGG 927
BSNT_05790___ 928 TATACAGACA---ATGACCGATGA 948
|||||||||| |.|||..|
RBAM_035080__ 928 TATACAGACAGCCAAGACTAA--- 948
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