Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05798 and RBAM_035140

See Amino acid alignment / Visit BSNT_05798 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05798___spsC.1.9828.seq
#    -bsequence dna-align/RBAM_035140___spsC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05798___spsC-RBAM_035140___spsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05798___spsC-RBAM_035140___spsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05798___spsC
# 2: RBAM_035140___spsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity:     918/1195 (76.8%)
# Similarity:   918/1195 (76.8%)
# Gaps:          50/1195 ( 4.2%)
# Score: 3457.5
# 
#
#=======================================

BSNT_05798___      1 ATGGTGCAAAAGAGAAATCA--TTTTCTCCCTTACTCATTGCCGTTAATC     48
                     |||||||||||.||  ||||  ||||||.||.||.||||||||..|.|||
RBAM_035140__      1 ATGGTGCAAAAAAG--ATCAGCTTTTCTTCCCTATTCATTGCCCATGATC     48

BSNT_05798___     49 GGTAAGGAAGAAATTCAGGAGGTTACAGAAACGCTTGAATCGGGATGGCT     98
                     ||.|||||.||||||||||||||||..||.||||||||||||||.|||||
RBAM_035140__     49 GGGAAGGACGAAATTCAGGAGGTTATTGATACGCTTGAATCGGGCTGGCT     98

BSNT_05798___     99 TTCTAAAGGCCCGAAGGTTCAGCAGTTTGAAAAAGAGTTTGCCGCGTTTG    148
                     |||.||.||.|||||.||..||..|||||||||||..|||||||| .|.|
RBAM_035140__     99 TTCAAAGGGACCGAAAGTAGAGGCGTTTGAAAAAGCTTTTGCCGC-CTGG    147

BSNT_05798___    149 TC-GGGGCGAAGCACGCCGTGGCGGTGAATTCATGTACCGCAGCTTTATT    197
                     .| |||||.||||||||..|.|||.||||.|||||||||||.|||||.||
RBAM_035140__    148 ACGGGGGCAAAGCACGCGATCGCGCTGAACTCATGTACCGCCGCTTTGTT    197

BSNT_05798___    198 TTTGGCTTTGAAAGCAAAAGGGATCGGGCCCGGGGACGAGGTCATTACCT    247
                     ||||||..||||.||.|||||||||||.|||||.|||||||||||.||.|
RBAM_035140__    198 TTTGGCCCTGAAGGCGAAAGGGATCGGTCCCGGCGACGAGGTCATCACGT    247

BSNT_05798___    248 CT-CCGCTTACGTTCAGCTCGACCGCCAATACGATTATTCATACGGGAGC    296
                     || ||| |.||||||||.||.||.||||||||.||..|.||.||.|  ||
RBAM_035140__    248 CTGCCG-TGACGTTCAGTTCAACAGCCAATACAATCGTGCACACAG--GC    294

BSNT_05798___    297 GACG--CCTGTGTTTGCGGATATTGACCAAAAC----ACGCTCAATATTG    340
                     |.||  ||.|||||||..||.||.||.|    |    |||||.|||...|
RBAM_035140__    295 GCCGTTCCGGTGTTTGTTGACATCGATC----CGCTTACGCTGAATGCAG    340

BSNT_05798___    341 ACCCGGTAAAGCTTGAGGCGGCCGTCACACCGCGAACGAAAGCAGTTGTG    390
                     ||||.|.|||..||||||||||||||||.|||||.||.|||||..||||.
RBAM_035140__    341 ACCCTGAAAAAATTGAGGCGGCCGTCACCCCGCGGACAAAAGCGATTGTA    390

BSNT_05798___    391 CCCGTCCACTTTGGCGGGCAGTCCTGCGATATGGATGCA-ATATTGGCTA    439
                     |||||.||.||.|.|||.|||||.||.||||||||| || ||..||||.|
RBAM_035140__    391 CCCGTTCATTTCGCCGGCCAGTCGTGTGATATGGAT-CAGATTCTGGCCA    439

BSNT_05798___    440 TTGCCCAAAATCATGGTTTATTCGTGCTGGAGGATGCGGCACATGCGGTA    489
                     |||||.||||.|||...|||||.||..|.||||||||.||||||||.||.
RBAM_035140__    440 TTGCCGAAAAGCATCAGTTATTTGTCTTAGAGGATGCCGCACATGCCGTG    489

BSNT_05798___    490 TATACGACTTATAAGCAAAGAATGATCGGTTCTATCGGAGATGCAACGGC    539
                     |||||.|||||.||.||.|.|||||||||.||.|||||.|||||.|||||
RBAM_035140__    490 TATACCACTTACAAACAGAAAATGATCGGATCAATCGGCGATGCGACGGC    539

BSNT_05798___    540 ATTCAGCTTTTACGCCACCAAAAACCTCGCGACAGGGGAAGGCGGCATGC    589
                     |||||||||.|||||.||.||||||||.||.||.||.|||||||||||||
RBAM_035140__    540 ATTCAGCTTCTACGCGACAAAAAACCTGGCAACCGGTGAAGGCGGCATGC    589

BSNT_05798___    590 TGACGACTGATGATGAGGAGCTTGCCGATAAGATCCGGGTGCTAAGCCTT    639
                     |||||||.||.|||||.|.||||||||||.|||||.|||||||.||||||
RBAM_035140__    590 TGACGACGGACGATGACGGGCTTGCCGATCAGATCAGGGTGCTCAGCCTT    639

BSNT_05798___    640 CACGGCATGAGTAAAGCCGCATGGAACCGTTATTCTTCAAATGGCAGCTG    689
                     |||||||||||.||||.|||.||||||||.|||||||||||.||.|||||
RBAM_035140__    640 CACGGCATGAGCAAAGGCGCGTGGAACCGCTATTCTTCAAACGGAAGCTG    689

BSNT_05798___    690 GTACTATGAAGTCGAATCGCCCGGCTATAAGATGAATATGTTTGATTTGC    739
                     ||||||.||.||||||.|||||||||||||.|||||||||||||||.|.|
RBAM_035140__    690 GTACTACGAGGTCGAAACGCCCGGCTATAAAATGAATATGTTTGATCTTC    739

BSNT_05798___    740 AGGCGGCCCTCGGACTTCATCAGCTAAAACGGCTGGATGATATGCAGAAA    789
                     ||||.||.||.||.|||||||||||.||||||.|.||....||||||.||
RBAM_035140__    740 AGGCAGCGCTTGGGCTTCATCAGCTGAAACGGATTGACAGCATGCAGCAA    789

BSNT_05798___    790 CGGAGAGAAGAGATTGCCGGCCGCTATCAAACCGCTTTTCAG-CAGATTC    838
                     .|.||||..||.|||||..|||||||.||...||| .||||| ||.||..
RBAM_035140__    790 AGAAGAGCCGACATTGCGAGCCGCTACCAGGACGC-CTTCAGACACATGA    838

BSNT_05798___    839 CGGGACTGATCACGCCGTTTGTCCATGATGACGGCAGGCACGCCTGGCAT    888
                     ..||.||||.||..|||..||||..|||||||||..||||.||.||||||
RBAM_035140__    839 AAGGGCTGACCATCCCGCATGTCAGTGATGACGGGCGGCATGCATGGCAT    888

BSNT_05798___    889 CTATATGTTCTGCAAGTTGATGAAAAAAAGGCCGGGGTTACGCGCAGCGA    938
                     ||.||||||||.|||.|.||.||..|..||||||||||.|..||.|.|||
RBAM_035140__    889 CTGTATGTTCTTCAAATAGAGGAGCAGGAGGCCGGGGTCAGCCGGAACGA    938

BSNT_05798___    939 AATGATTACGGCTTTAAAGGATAAATACAATATCGGCACTAGCGTTCATT    988
                     ..|||||.|.||||||||.||..||||.|||||||||||.||.|||||||
RBAM_035140__    939 TCTGATTTCCGCTTTAAAAGACCAATATAATATCGGCACAAGTGTTCATT    988

BSNT_05798___    989 TTATTCCAGTACACATT-CATCCGTATTATCAAAAGCAA--TTTGGATAT   1035
                     |||||||.||.| |.|| |||||||||||||||||  ||  |..||.|||
RBAM_035140__    989 TTATTCCGGTTC-CGTTCCATCCGTATTATCAAAA--AACGTACGGGTAT   1035

BSNT_05798___   1036 AAGGAAGCGGACTTTCCGAATGCC----------ATGAATTACTATAAAC   1075
                     ||||||.|.|||||||||   |||          ||       |||.|.|
RBAM_035140__   1036 AAGGAAACTGACTTTCCG---GCCGCGGCCGCGTAT-------TATCACC   1075

BSNT_05798___   1076 GAACCCTTTCTCTCCCGCTCTATCCATCAATGTCTGACGACGATGTAGAT   1125
                     |.|||.|.||.|||||.||.|||||.||||||.|.||.|||||.||.||.
RBAM_035140__   1076 GCACCGTGTCACTCCCTCTTTATCCGTCAATGACAGATGACGACGTTGAA   1125

BSNT_05798___   1126 GATGTCATTGAAGCTGTGCGGGATATCGTAAAAGGGGCTGATTAA   1170
                     .|.|||||||.|||.||...|||||||||.||||||||||||||.
RBAM_035140__   1126 TACGTCATTGCAGCCGTTACGGATATCGTCAAAGGGGCTGATTAG   1170


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