Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05814 and RBAM_035220

See Amino acid alignment / Visit BSNT_05814 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence dna-align/BSNT_05814___ywdF.1.9828.seq
#    -bsequence dna-align/RBAM_035220___ywdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05814___ywdF-RBAM_035220___ywdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05814___ywdF-RBAM_035220___ywdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05814___ywdF
# 2: RBAM_035220___ywdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     619/839 (73.8%)
# Similarity:   619/839 (73.8%)
# Gaps:          64/839 ( 7.6%)
# Score: 2287.0
# 
#
#=======================================

BSNT_05814___      1 ATGAAGATTTCTATCGTAATTGTGACCTATAATCGGATTCCGGCTTTGTG     50
                     |||||.||.||.||.||.||.||.||.|||||.|||||||||||||||||
RBAM_035220__      1 ATGAATATATCAATTGTCATAGTCACGTATAACCGGATTCCGGCTTTGTG     50

BSNT_05814___     51 TGAGCTTTTGGAGTCGATTTCCCGCCAGACCTTGAAGCCGTATGAAATTA    100
                     |||.||..||||||||||||||...||||||.|.|||||.||||||.|.|
RBAM_035220__     51 TGAACTGCTGGAGTCGATTTCCATGCAGACCATAAAGCCTTATGAAGTGA    100

BSNT_05814___    101 TTATTGTGAATGATGCCGGGGAATCGGTCGTGCCGGTCAAAGCA-CTGTA    149
                     |.|||||.||||||||||||||||||||||..|..| |.||||| |||||
RBAM_035220__    101 TCATTGTAAATGATGCCGGGGAATCGGTCGAACAAG-CGAAGCAGCTGTA    149

BSNT_05814___    150 TCCG-GAGCTGCCGATTGCTG-TCATCAATTTAGAAAAGAACTCGGGGCA    197
                      |.| ||.||||||||| |.| |.||..||||||||.||||..|.||.||
RBAM_035220__    150 -CAGCGATCTGCCGATT-CAGATTATTGATTTAGAACAGAATGCCGGACA    197

BSNT_05814___    198 TGTGGCTGCGAGAAATGCCGGTGTAAAAGAGGCGTCTGGCGATTGCATTA    247
                     |||||..|||.|.||.||.|||||.|||.|.|||||.||.|||||.||.|
RBAM_035220__    198 TGTGGAGGCGCGGAACGCAGGTGTGAAAAAAGCGTCGGGTGATTGTATCA    247

BSNT_05814___    248 TGCTGTGTGATGACGATGATTTCTTTACGCCAGGGCATATCGAGAAAATG    297
                     |||||||.|||||.|||||||||.|||||||.||.|||.|.||.|.||||
RBAM_035220__    248 TGCTGTGCGATGATGATGATTTCATTACGCCGGGCCATTTGGAAAGAATG    297

BSNT_05814___    298 GCAAAGGAAATAGAAACGGCT---------------GACTTCGTTCATTC    332
                     |               |||||               ||.||.||.|||||
RBAM_035220__    298 G---------------CGGCTGCACTTGCTGATGCGGATTTTGTCCATTC    332

BSNT_05814___    333 TGATGCGGAAATAGTTTCGTTTGAAGAGAAATA-----CGGAACAAGATA    377
                     |||.||||||||.||.||.||||||||     |     |||.||.|||||
RBAM_035220__    333 TGACGCGGAAATTGTGTCATTTGAAGA-----ACGGGGCGGCACGAGATA    377

BSNT_05814___    378 TCCAGTGTCACGGAAATTGTTT-GCTTATACCGCTGACTATGAGGATATG    426
                     .||.||||||| ||||...||| ||.|||||.||.||.||||.|||||||
RBAM_035220__    378 CCCGGTGTCAC-GAAAGCCTTTCGCCTATACGGCGGATTATGCGGATATG    426

BSNT_05814___    427 AGAGTGTTTTCTACATACGTGCCGTCGGGCAGCATGTACAGACGTTTTCT    476
                     .|.||.|||||.||.|||||.|||||.||||||||||||||..|||.|||
RBAM_035220__    427 CGGGTATTTTCCACGTACGTTCCGTCAGGCAGCATGTACAGGTGTTCTCT    476

BSNT_05814___    477 GCATGA----TGAAATCGGGTATTTCGATGCTGATGTGCACAATTACTGG    522
                     ||||||    |    |.||||||||.|||.|.|||||.||.|||||.|||
RBAM_035220__    477 GCATGACACGT----TAGGGTATTTTGATCCGGATGTCCATAATTATTGG    522

BSNT_05814___    523 GATTGGGATTTTTATCTGCGCGCGGCCAAGGATTACCGGGTGAAGCGTGT    572
                     ||.|||||.||||||.|||||||.||.||..|..||||.|||||||||||
RBAM_035220__    523 GACTGGGACTTTTATTTGCGCGCCGCAAAACAGCACCGTGTGAAGCGTGT    572

BSNT_05814___    573 CCCTTGCGCCAGTGTGATTTATGC----CTTCAGTGACGCGGGAGACAAT    618
                     .||||||||.||.||.||.|||||    .||.||.||.||||    ||||
RBAM_035220__    573 TCCTTGCGCGAGCGTCATATATGCGTTTTTTGAGGGAGGCGG----CAAT    618

BSNT_05814___    619 CAGTCTGCGGACCTTGGCGCCAAGCGGAAGCAATATTTGGATCGTTTAAG    668
                     |||||.|||||.||.||||.|||.|||||||..||.||.||.||.|||||
RBAM_035220__    619 CAGTCCGCGGATCTCGGCGGCAAACGGAAGCGGTACTTAGACCGGTTAAG    668

BSNT_05814___    669 TGAAAAGCACGGACTCGGGGAGCTGCCGACGAAAAACTTTGCCGTCCTGC    718
                     .|||||||||.|.||.||||||||.||||||||||||||.||.||.||.|
RBAM_035220__    669 CGAAAAGCACAGGCTTGGGGAGCTCCCGACGAAAAACTTCGCGGTTCTTC    718

BSNT_05814___    719 TTGAAGAGCCTGAGATGAAGAGGCGGGAAGCAAAAAGTGAAATGGTTTGG    768
                     ||||||||||.||.||||||||||||||.||....|.|||.||.||.|||
RBAM_035220__    719 TTGAAGAGCCGGACATGAAGAGGCGGGAGGCGCCGACTGACATTGTGTGG    768

BSNT_05814___    769 GATGGCGAGCCTGTCTATTCCAGACTTCATCGTTCGTAA    807
                     ||.||..||||.|||.||||.|||||.||..||||.|||
RBAM_035220__    769 GACGGAAAGCCCGTCCATTCAAGACTGCACAGTTCATAA    807


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05814 and RBAM_035220

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
