Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05817 and RBAM_035280

See Amino acid alignment / Visit BSNT_05817 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence dna-align/BSNT_05817___sacA.1.9828.seq
#    -bsequence dna-align/RBAM_035280___sacA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05817___sacA-RBAM_035280___sacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05817___sacA-RBAM_035280___sacA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05817___sacA
# 2: RBAM_035280___sacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity:    1046/1500 (69.7%)
# Similarity:  1046/1500 (69.7%)
# Gaps:         120/1500 ( 8.0%)
# Score: 3425.5
# 
#
#=======================================

BSNT_05817___      1 ATGACAGCACATGATCAGGAGCTTCGTCGCCGGGCTTATGAAGAAGTGGA     50
                     ||||...|||..|||||.|||||.||.|..|.|||   |||.||||.|  
RBAM_035280__      1 ATGAGGACACCGGATCAAGAGCTGCGCCTGCAGGC---TGAGGAAGCG--     45

BSNT_05817___     51 GAAAAAAGAGCCCATCGCTG----ACAGC-------GATCCGCACCGCCA     89
                       |||||||    |.||..|    |||||       |||||..|||||||
RBAM_035280__     46 --AAAAAGA----AGCGGGGAGAAACAGCCGCGTCAGATCCATACCGCCA     89

BSNT_05817___     90 GCATTTTCATATCATGCCGCCGGTTGGGCTGCTGAATGACCCGAATGGCC    139
                     |.|.|.||||||.|||||||||||.|||||..|.|||||.|||||.|||.
RBAM_035280__     90 GAACTATCATATTATGCCGCCGGTCGGGCTTTTAAATGATCCGAACGGCG    139

BSNT_05817___    140 TGATTTATTGGAAGGGCAGCTATCATGTATTCTTTCAGTGGCAGCCGTTT    189
                     ||||..|.|||||.|||...|||||..|.||.|||||.||||||||.|||
RBAM_035280__    140 TGATCCAATGGAACGGCGTATATCACTTGTTTTTTCAATGGCAGCCATTT    189

BSNT_05817___    190 CAGACGGGGCACGGCGCAAAATTTTGGGGGCATTATACGACACAGGATGT    239
                     ||.||||||||||||||.||||||||||.||||...|||||..|||||.|
RBAM_035280__    190 CATACGGGGCACGGCGCGAAATTTTGGGCGCATGTGACGACGAAGGATTT    239

BSNT_05817___    240 TGTGAATTGGAAGCGGGAAGAGATTGCGCTGGCTCCGAGTGATTGGTTTG    289
                     .||..|.|||||...||||||.||.|||||.||.|||.||||.||||.||
RBAM_035280__    240 CGTTGAGTGGAAAGAGGAAGAAATCGCGCTTGCGCCGGGTGAGTGGTATG    289

BSNT_05817___    290 ATAAAAACGGCTGCTACTCGGGCAGCGCTGTCACGAAAGACGATCGGCTC    339
                     |.|||||||||||.||.||.||.|||||..||...|||||||..||||||
RBAM_035280__    290 ACAAAAACGGCTGTTATTCCGGAAGCGCCATCGAAAAAGACGGGCGGCTC    339

BSNT_05817___    340 TATCTGTTTTACACAGGAAATGTCAGGGATCAG-GATGGAAACCGGGAAA    388
                     |..|||.|.||||||||.||||||.|.|| |.| ||.||.||.|||||||
RBAM_035280__    340 TGCCTGATGTACACAGGCAATGTCCGTGA-CGGAGAAGGCAATCGGGAAA    388

BSNT_05817___    389 CGTATCAATGCCTTGCTGTTTCTGACGACGGGCT-GTCCTTTGAGAAAAA    437
                     |.|||||||||||.||.||.||.||.||||||.| || .|||||.|||||
RBAM_035280__    389 CATATCAATGCCTCGCCGTATCCGAAGACGGGATCGT-ATTTGAAAAAAA    437

BSNT_05817___    438 GGGTGTTGTCGCCCGCCTTCCGGAAGGATATACGGCGCATTTTCGCGATC    487
                     .||.||.|||||.||.||.||||||||.|||||.||.|||||.||.||||
RBAM_035280__    438 AGGAGTCGTCGCGCGTCTCCCGGAAGGCTATACCGCTCATTTCCGTGATC    487

BSNT_05817___    488 CGAAGGTATGGGAGCATGAAGGCACATGGTATATGGTGATTGGTGCGCAA    537
                     |||||||.|||.||.|.||.||..|.|..||.||||||.|.||.|||||.
RBAM_035280__    488 CGAAGGTTTGGAAGAAAGACGGAGCGTATTACATGGTGCTCGGCGCGCAG    537

BSNT_05817___    538 ACAGAGAATTTGAAAG------GGCAG-GCTGTATTGTTTGCTTCTGATA    580
                     |||||       ||||      ||.|| |||||.|||||..|.||.||.|
RBAM_035280__    538 ACAGA-------AAAGCTCACCGGAAGCGCTGTGTTGTTCACATCAGAGA    580

BSNT_05817___    581 ACCTGAGTGAGTGGAGATTTCTTGGCCCGATAACCGGCGCGGGCTTCAAC    630
                     ||.|||..||.||||..|||||.||..||||..|.||.||||.||.|..|
RBAM_035280__    581 ACTTGACGGATTGGACGTTTCTCGGTTCGATTGCGGGAGCGGACTCCGGC    630

BSNT_05817___    631 GGGCT--GGACGATTTTGGATACATGTGGGAATGTCCGGATTTGTTTTCC    678
                     ||.||  ||.|  .||.||.||.||||||||||||||.||..||||||||
RBAM_035280__    631 GGTCTCGGGTC--ATTCGGTTATATGTGGGAATGTCCCGACCTGTTTTCC    678

BSNT_05817___    679 CTTCAAGGATCGGACGTGCTGATTGTTTCGCCTCAAGGGCTTGAGGCTGA    728
                     |||.|.|||.|.|||||||||.|.||.|..||.||.||||||||.||.||
RBAM_035280__    679 CTTGACGGAACCGACGTGCTGCTCGTATGTCCGCAGGGGCTTGAAGCCGA    728

BSNT_05817___    729 CGGTTTCCGTTATCAGAACGTATATCAATCA----GGTTATTTTGTCGGG    774
                     |||..|....|||||.|||    |.|.|.||    ||.|||||..||||.
RBAM_035280__    729 CGGGATAGAATATCATAAC----AGCCACCAGGCGGGCTATTTCCTCGGC    774

BSNT_05817___    775 TGTCTCGATTATAACA----AGCCTGAACTGAAGCATGGTGAATTTACGG    820
                     .|.||..||    |||    .|||.|||.|.|||||.|||||||||||||
RBAM_035280__    775 AGGCTGCAT----ACAGAGCCGCCAGAATTTAAGCACGGTGAATTTACGG    820

BSNT_05817___    821 AGCTTGATCA-AGGTTTTGATTTTTACGCGCCGCAAACACTTGAAGATAA    869
                     ||||||| || |||.|||||.|||||||||.||||.||.||.||||||.|
RBAM_035280__    821 AGCTTGA-CAGAGGATTTGACTTTTACGCGGCGCAGACGCTGGAAGATGA    869

BSNT_05817___    870 TCAGGG-CAGACGAATTTTGTTTGCATGGATGGCTGTGCCTGACCAGGAT    918
                     |.|||| |.|| |||||.||||.||.|||||||..||.||.||.|||.||
RBAM_035280__    870 TAAGGGACGGA-GAATTCTGTTCGCGTGGATGGGCGTTCCGGATCAGCAT    918

BSNT_05817___    919 GAAGGATC--TCATCCGACGATTGACTATCACTGGATTCACTGCATGACG    966
                     | |||| |  .||||||||...||..||||||||||||||||||.|.||.
RBAM_035280__    919 G-AGGA-CAAACATCCGACCCATGCGTATCACTGGATTCACTGCTTAACA    966

BSNT_05817___    967 CTGCCGAGACAGCTGACAATATC---AGGCGAGAAGCTGATTCAGCAGCC   1013
                     .||||||||||||||.||.|.||   .||| ||||  |.||.||||..||
RBAM_035280__    967 ATGCCGAGACAGCTGTCACTGTCCAACGGC-AGAA--TCATACAGCGCCC   1013

BSNT_05817___   1014 GCTGCCTGAGCTGAAAGCCATGCGCAGAAATGA-GAAAAAAATACA----   1058
                     |||..|.||..|||||.|   .|||.|.||.|| |||.|||| .||    
RBAM_035280__   1014 GCTTTCGGAAATGAAATC---ACGCCGCAAGGATGAACAAAA-GCACCGT   1059

BSNT_05817___   1059 CATCAATATGCATGGATCATCTGGTACGCTTCCAGTGGAAAAGCCTGAAA   1108
                     |.||||| ||.||.|.||.||| |||.||.|||.|         .|||||
RBAM_035280__   1060 CTTCAAT-TGAATTGCTCGTCT-GTAAGCCTCCCG---------GTGAAA   1098

BSNT_05817___   1109 GA----------GCTGAGATTCTGCTGGAAGACATTCA--TACGGAGTCT   1146
                     ||          |||||..|.||||||||.|||| |||  |.| ||.||.
RBAM_035280__   1099 GATGCGTCCCGGGCTGAAGTGCTGCTGGAGGACA-TCACTTGC-GAATCC   1146

BSNT_05817___   1147 GGCTTTTCAATCAGTATCCGCGGAACGGCTACGTTTTCCTTCCAAAAAGA   1196
                     ||.|||..||||...||.||.||..|.||...||||...||.||..|.||
RBAM_035280__   1147 GGTTTTGAAATCTCAATTCGGGGCGCAGCCCGGTTTATATTTCATCAGGA   1196

BSNT_05817___   1197 CGAGGGGATTGTTACGCTGGAACGAAAGAGCTTTGA-CG-----GAAAAA   1240
                     .||||||.|.|.|..||||||.|| .|..|||||.| ||     ||||||
RBAM_035280__   1197 AGAGGGGCTGGCTGTGCTGGAGCG-CACCGCTTTCAGCGGAGAAGAAAAA   1245

BSNT_05817___   1241 GAAAAGAGTCGAGACATTGCCGCATCAAGGATTTGCATACCGTACACATG   1290
                     |||||     ||||...|||..|||||..||..|||||.||||.||..|.
RBAM_035280__   1246 GAAAA-----GAGAAGCTGCGCCATCAGCGAGGTGCATTCCGTGCAGCTC   1290

BSNT_05817___   1291 TTTCTCGACGCGTCATCTGTGGAAATCTTTATCAATAACGGAGAAGAGGT   1340
                     |||||.||.||.||.||..|.|||.|.|||.|.|||.|.|||||||||||
RBAM_035280__   1291 TTTCTGGATGCATCCTCGATTGAATTGTTTTTGAATGATGGAGAAGAGGT   1340

BSNT_05817___   1341 CTTTAGTGCGAGATATTTTCCTTTCCCGGGAAATCATGAAGTAACAGCCA   1390
                     .||.|||||.||||||||||||||||||||||||.||||.|||||.|.||
RBAM_035280__   1341 ATTCAGTGCCAGATATTTTCCTTTCCCGGGAAATGATGACGTAACCGTCA   1390

BSNT_05817___   1391 GTTCGACCGGGAAATCTGAAATGAATGTCTTAATTTGGACACTTATGTAG   1440
                     .||||.|.||.|||.|.|||||.||||..|.|||||||.|||||.|||||
RBAM_035280__   1391 CTTCGGCAGGAAAAACGGAAATAAATGGATCAATTTGGGCACTTTTGTAG   1440


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