Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05821 and RBAM_035300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:20
# Commandline: needle
# -asequence dna-align/BSNT_05821.1.9828.seq
# -bsequence dna-align/RBAM_035300___sacT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05821-RBAM_035300___sacT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05821-RBAM_035300___sacT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05821
# 2: RBAM_035300___sacT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity: 406/835 (48.6%)
# Similarity: 406/835 (48.6%)
# Gaps: 350/835 (41.9%)
# Score: 1691.0
#
#
#=======================================
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 1 TTGAGAATAGACAAAGTATTAAATAACAATGCGGCGTTAATAAAAGAAGA 50
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 51 CGGACGGGAAAAGATCGTAATGGGTCCCGGAATCGCTTTTCAAAAGAGAA 100
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 101 AAAATGATGTGATTCAAAAACATAAAATTGAAAAAATATTTGTCGTGCAC 150
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 151 GACGAAAATGAAAAGTTCAAACAAGTGTTAGAAACGCTTCCCGAAGAGCA 200
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 201 TATAGAGGCGGCTGAAGATATCATCAGCCATGCGGAGGGAGAGCTTGCGG 250
BSNT_05821 0 -------------------------------------------------- 0
RBAM_035300__ 251 CACCTTTGAGCGATCACATCCACATTGCGCTGGCGGACCATTTATCCTTT 300
BSNT_05821 1 ------------------------------------------TTGCTGCA 8
|||||.||
RBAM_035300__ 301 GCGATCGAAAGGATTCAAAACGGCCTTCAGGTGCATAACCGATTGCTTCA 350
BSNT_05821 9 TGAGATAAAGGCGCTCTATAAAAAAGAATATGAGATCGGCCTGTGGGCGA 58
|||.||.||||||||.|||||||||||||||||||||||||..||||||.
RBAM_035300__ 351 TGAAATTAAGGCGCTTTATAAAAAAGAATATGAGATCGGCCGCTGGGCGG 400
BSNT_05821 59 TCGGACATGTAAAAGAGACATTGGGCATGTCTCTGCCTGAAGATGAAGCG 108
|.|.|||.||.|||.|.||..|.||.||.||..|||||||.|||||.|||
RBAM_035300__ 401 TTGAACACGTGAAACAAACCCTCGGTATATCATTGCCTGATGATGAGGCG 450
BSNT_05821 109 GGTTATATTGCCCTTCACATCCATACGGCGAAGATGGATGCGGAGAGCAT 158
||.|||||.||.|||||.|||||.||.||.|||..||||||..|.|||||
RBAM_035300__ 451 GGGTATATCGCGCTTCATATCCACACTGCCAAGGCGGATGCCAAAAGCAT 500
BSNT_05821 159 GTATTCGGCGCTGAAGCATACGACCATGATCAAAGAAATGATAGAGAAAA 208
||||||||||.||||||||||.||||||||||||||||||||.||.||.|
RBAM_035300__ 501 GTATTCGGCGATGAAGCATACAACCATGATCAAAGAAATGATCGAAAAGA 550
BSNT_05821 209 TAGAACAATACTTTAATCGA----AAGGTGGATGAAAACAGCATTTCCTA 254
|.||| .||||..|||| ||||||||||||.||||.||||||||
RBAM_035300__ 551 TCGAA----TCTTTTTTCGAACAGAAGGTGGATGAAGACAGTATTTCCTA 596
BSNT_05821 255 TCAACGCCTTGTCACGCATTTGCGATACGCGGTCAGCCGGTTGGAATCAA 304
|||.|||||.||||||||.||.||.||.|||||||||||||||||.||||
RBAM_035300__ 597 TCAGCGCCTCGTCACGCACTTACGGTATGCGGTCAGCCGGTTGGACTCAA 646
BSNT_05821 305 ATGAAGCGCTCCATCGTATGGACGAGGAGATGCTTTATTTCATCCAAAAA 354
|||||||.||||||...|||||||||||||||||||||||||||||||||
RBAM_035300__ 647 ATGAAGCACTCCATTCCATGGACGAGGAGATGCTTTATTTCATCCAAAAA 696
BSNT_05821 355 AAGTATTCATTCGCCTATCAATGTGCGCTGGAGCTGGCGGAGTTTTTGAA 404
||||||.|.||.||.||||..||||||||.||.|||||||.||||||.||
RBAM_035300__ 697 AAGTATCCGTTTGCTTATCGGTGTGCGCTTGAACTGGCGGCGTTTTTAAA 746
BSNT_05821 405 AAATGAATATCAATTACATTTGCCGGAATCCGAGGCCGGCTATATCACGC 454
||||||||||.|.||..|..|||||||||||||||||||||||||.||||
RBAM_035300__ 747 AAATGAATATGATTTGGAACTGCCGGAATCCGAGGCCGGCTATATTACGC 796
BSNT_05821 455 TGCATGTCCAGCGTCTTCAAGATCTCTCGGAATAA 489
||||||||||||||||.|||.|...|.||||||||
RBAM_035300__ 797 TGCATGTCCAGCGTCTGCAAAAAAACCCGGAATAA 831
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