Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05827 and RBAM_035360

See Amino acid alignment / Visit BSNT_05827 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:20
# Commandline: needle
#    -asequence dna-align/BSNT_05827___nfrA.1.9828.seq
#    -bsequence dna-align/RBAM_035360___nfrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05827___nfrA-RBAM_035360___nfrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05827___nfrA-RBAM_035360___nfrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05827___nfrA
# 2: RBAM_035360___nfrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity:     590/760 (77.6%)
# Similarity:   590/760 (77.6%)
# Gaps:          20/760 ( 2.6%)
# Score: 2264.0
# 
#
#=======================================

BSNT_05827___      1 ATGAATAACACAATCGAAACCATTTTGAATCATCGGTCAATCCGGTCTTT     50
                     |||||.||.||.|||||||||||..|.|||||||||||.|||||.||.||
RBAM_035360__      1 ATGAACAATACCATCGAAACCATACTTAATCATCGGTCGATCCGATCATT     50

BSNT_05827___     51 TACTGATCAGCTTTTGACAGCTGAAGAAATTGATACATTAGTGAAAAGTG    100
                     ||||||..|||||.|||||||.|||||.||.|||||||||||||||||.|
RBAM_035360__     51 TACTGACGAGCTTCTGACAGCAGAAGAGATAGATACATTAGTGAAAAGCG    100

BSNT_05827___    101 CGCAGGCTGCGTCTACATCCAGCTATGTGCAGGCATATTCGATTATCGGG    150
                     |.|||||.|||||.||.|||||.||.||||||||.||.||.||.|||||.
RBAM_035360__    101 CCCAGGCGGCGTCAACGTCCAGTTACGTGCAGGCTTACTCCATCATCGGC    150

BSNT_05827___    151 GTTTCTGATCCTGAGAAAAAACGTGAGCTGTCCGTGCTTGCTGGGAATCA    200
                     ||..|||||...||||||||.||..|||||.|.|..||.||.||.||.||
RBAM_035360__    151 GTAACTGATAAGGAGAAAAAGCGGAAGCTGGCGGCACTGGCCGGAAACCA    200

BSNT_05827___    201 GCCTTACGTTGAGAAGAACGGACACTTTTTTGTATTTTGTGCGGATTTGT    250
                     |||||||||.|||||.|||||.|||||.|||||||||||.||.|||||||
RBAM_035360__    201 GCCTTACGTCGAGAATAACGGGCACTTGTTTGTATTTTGCGCTGATTTGT    250

BSNT_05827___    251 ACCGCCATCAACAACTGGCTGAGGAAAAAGGTGAACATATTTCTGAGCTG    300
                     ||||||||.||.||||.||||||||||||||.|||.|.|||.|.|||||.
RBAM_035360__    251 ACCGCCATAAAAAACTTGCTGAGGAAAAAGGCGAAAACATTACCGAGCTT    300

BSNT_05827___    301 CTCGAGAATACAGAAATGTTTATGGTTAGCTTGATTGATGCGGCGCTGGC    350
                     ||.||||||||.||||||||||||||.|||.|.||||||||.||.||.||
RBAM_035360__    301 CTTGAGAATACGGAAATGTTTATGGTCAGCGTCATTGATGCCGCACTTGC    350

BSNT_05827___    351 AGCGCAAAATATGAGCATTGCCGCTGAATCCATGGGGCTTGGCATTTGCT    400
                     .||.|||||..|.||..|||||||.|||||.|||||.|||||||||||.|
RBAM_035360__    351 CGCACAAAACGTAAGTGTTGCCGCGGAATCAATGGGACTTGGCATTTGTT    400

BSNT_05827___    401 ATATCGGCGGCATTCGGAATGAACTGGACAAGGTGACAGAGGTGCTGCAA    450
                     |||||||.||||||||.||||||||.||..|||||||.||.|||||...|
RBAM_035360__    401 ATATCGGAGGCATTCGAAATGAACTTGATCAGGTGACGGAAGTGCTTGGA    450

BSNT_05827___    451 ACGCCTGACCATGTGCTCCCGCTTTTCGGACTGGCAGTAGGCCATCCTGC    500
                     |||||||||||||||||.|||||.|||||..|||.|||.||.|||||.||
RBAM_035360__    451 ACGCCTGACCATGTGCTGCCGCTGTTCGGCTTGGTAGTCGGTCATCCCGC    500

BSNT_05827___    501 GAACCTTTCCGGCAAAAAACCGAGATTGCCAAAGCAGGCCGTTTATCATG    550
                     ..|.|..|||||..||||.|||.|..||||.||.||.|||||.|||||||
RBAM_035360__    501 TCATCCGTCCGGTCAAAAGCCGCGCCTGCCGAAACAAGCCGTATATCATG    550

BSNT_05827___    551 AGAATACGTA------TAATG-TGAACACAGACGATTTCCGTCA--TACT    591
                     |.||.|||||      .|||| .||||||       ||||| ||  || |
RBAM_035360__    551 AAAACACGTACGATACGAATGAAGAACAC-------TTCCG-CAGTTA-T    591

BSNT_05827___    592 ATGAATACGTATGACAAAACCATTTCTGATTACTATAGAGAAA-GAACAA    640
                     |||||....|||||..||||||||||.|.|||.||| ||.||| |.||||
RBAM_035360__    592 ATGAAGGAATATGATGAAACCATTTCCGCTTATTAT-GATAAACGGACAA    640

BSNT_05827___    641 ACGGGCAGCGGGAAGAAACGTGGTCCGATCAAATACTGAACTTTATGAAG    690
                     ||||..||||||..|||||||||||.||||||||.|||.|.||.|||||.
RBAM_035360__    641 ACGGCAAGCGGGTTGAAACGTGGTCTGATCAAATCCTGCAGTTCATGAAA    690

BSNT_05827___    691 CAAAAGCCGCGTACGTATTTAAATGACTACGTGAAAGAAAAGGGCTTTAA    740
                     |||||.|||.|.||.|||||||||.|.||.||.|||||.||.||.|||.|
RBAM_035360__    691 CAAAAACCGAGAACCTATTTAAATCAATATGTAAAAGATAAAGGTTTTCA    740

BSNT_05827___    741 TAAAAACTAA    750
                     .||.||.|||
RBAM_035360__    741 AAAGAATTAA    750


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