Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05829 and RBAM_035370

See Amino acid alignment / Visit BSNT_05829 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05829___rodA.1.9828.seq
#    -bsequence dna-align/RBAM_035370___rodA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05829___rodA-RBAM_035370___rodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05829___rodA-RBAM_035370___rodA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: RBAM_035370___rodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity:     867/1232 (70.4%)
# Similarity:   867/1232 (70.4%)
# Gaps:          94/1232 ( 7.6%)
# Score: 2881.0
# 
#
#=======================================

BSNT_05829___      1 ATGAGTCGATATAAGAAACAGCAAAGCCCCTTTTACCAGGGGGATTTGAT     50
                     |||||||||||||||||||||||||..||||.|||.||||||||||||||
RBAM_035370__      1 ATGAGTCGATATAAGAAACAGCAAAATCCCTATTATCAGGGGGATTTGAT     50

BSNT_05829___     51 TTTTATATTTGGTGTGTTTTTTATTATAAGCGTAGTATCAATTTATGCTG    100
                     |||||||||||||||||||||.||.||.||.||.|...|.||||||||.|
RBAM_035370__     51 TTTTATATTTGGTGTGTTTTTAATAATTAGTGTTGCGGCGATTTATGCGG    100

BSNT_05829___    101 CCGGTCAGTTTGGGCAGTATGGGAACACG-GAT---TGGATTCAG-CAAA    145
                     ||||.|||||.||||||||.||    |.| |||   |||| |.|| ||.|
RBAM_035370__    101 CCGGACAGTTCGGGCAGTACGG----AAGTGATGCCTGGA-TGAGACAGA    145

BSNT_05829___    146 TTGTGTTTTATTTTTTGGGGGCTGTTGCCAT--TACAGT-TCTTTTGTAC    192
                     |.||.||||||.|..|.||.||.|.|..|||  | |||| ||  .||||.
RBAM_035370__    146 TCGTCTTTTATGTCATCGGAGCCGGTCTCATGGT-CAGTATC--ATGTAT    192

BSNT_05829___    193 TTTGATTTAGAACAGCTTGAAAAGTTAAGTTTATATATTTTTATCATTGG    242
                     |||||||||||.|||||||||||..|.|||.|.||..|.||.||....||
RBAM_035370__    193 TTTGATTTAGAGCAGCTTGAAAAACTGAGTCTGTACGTGTTAATTGCCGG    242

BSNT_05829___    243 TATTTTATCTTTGATTATTCTTAAAATCAGT------CCCGAGTCTATTG    286
                     ..|..|.||..||.|..|| |||     .||      ||.||.||.||.|
RBAM_035370__    243 CGTGCTGTCGCTGCTCCTT-TTA-----CGTGTGGCGCCGGAATCCATCG    286

BSNT_05829___    287 CACCTGTTATTAAAGGGGCAAAAAGTTGGTTTAGGATCGGTAGAATAACA    336
                     |.||..|||..||.||.||.||.||.|||||||..|||||.||..|.||.
RBAM_035370__    287 CGCCGATTAAAAACGGAGCGAAGAGCTGGTTTAAAATCGGCAGCTTTACC    336

BSNT_05829___    337 ATACAGCCGTCAGAGTTTATGAAGGTTGGTTTGATTATGATGCTTGCTTC    386
                     .|.|||||.||.|||||.|.|||..|.||..|.||.||||||.|.||.||
RBAM_035370__    337 CTCCAGCCCTCTGAGTTCACGAAAATAGGAATTATGATGATGGTCGCGTC    386

BSNT_05829___    387 AGTTATTGGAAAAGCAAA-----TCCTAAAGGAGTTC---GGACGCTTAG    428
                     ..||||      |.|.||     .||..|||||  ||   ||.|.|||||
RBAM_035370__    387 CATTAT------ATCGAAGGCGGGCCCGAAGGA--TCAAAGGTCACTTAG    428

BSNT_05829___    429 GGATGAT----ATCCACTTGTTATTAAAGATTGCGGGTGTCGCA------    468
                     |||.|||    |||    ||.|.||.||.||||||      |||      
RBAM_035370__    429 GGAAGATGTGAATC----TGCTTTTGAAAATTGCG------GCATGGACG    468

BSNT_05829___    469 GTTATTCCTGTAGGTCTTATCTTGATGCAGGATGCTGGGAC---TGCGGG    515
                     ||||||||..|.||..|.|||.|..||||||||||.||.||   ||||  
RBAM_035370__    469 GTTATTCCGATCGGGATGATCGTTTTGCAGGATGCCGGAACGGGTGCG--    516

BSNT_05829___    516 AATATGTATGTTTATCGTTCTTGTAATGGTTTTTATGTCAGGGATAAACT    565
                      ||.|||.|||||||||||.|.||.|||||.||||||||.||..||||||
RBAM_035370__    517 -ATCTGTCTGTTTATCGTTATGGTGATGGTGTTTATGTCGGGTGTAAACT    565

BSNT_05829___    566 GGAAATTGATTGCGATCATAGCTGGTTCAGGTATCTTACTCATTTCATT-    614
                     ||||..||||..|.|||||.|..||||| ||.|.|  |||  |.|..|| 
RBAM_035370__    566 GGAAGCTGATCACCATCATCGGCGGTTC-GGCAGC--ACT--TGTGCTTG    610

BSNT_05829___    615 -AATTTTATTAG---TAATGATAAACTTTCCTGACGTTGCTAAATCAGTT    660
                      ..||||.||||   |..||||..|.|||||..|.||.||.||.|||.|.
RBAM_035370__    611 GCCTTTTCTTAGTGCTGGTGATTGAATTTCCCCATGTGGCGAATTCAATC    660

BSNT_05829___    661 GGAATACAGGATTATCAAATTAAGCGCGTCACTTCTTGGGTGTCTGCTTC    710
                     ||.||...|||||||||||||||.||..|.||.||.|||.||||||..||
RBAM_035370__    661 GGCATTGCGGATTATCAAATTAACCGGATTACATCGTGGATGTCTGACTC    710

BSNT_05829___    711 AAATG------AGACACAGGAAGATTCAAATGACAGCTGGCAAGTTGACC    754
                     .|.||      .|||.||||.|||.....||.|.||||||||.||.||.|
RBAM_035370__    711 CAGTGCGGCAACGACTCAGGCAGAGAGCGATAAAAGCTGGCAGGTGGATC    760

BSNT_05829___    755 AGGCCATCATGGCAATAGGATCTGGTGGTATTTTAGGTAATGGTATTTCT    804
                     |||||.|.|||||.||.|||||.||.||.|||...||.||.||..||..|
RBAM_035370__    761 AGGCCGTTATGGCGATCGGATCGGGCGGCATTACCGGAAACGGCGTTCAT    810

BSNT_05829___    805 AATTTGAAGGTTTATGTTCCAGAGAGTAC-GACTGACTTTATCTTTTCTA    853
                     |||.|||||||.||.||.||.||| |.|| |||.||||||||||||.|.|
RBAM_035370__    811 AATCTGAAGGTGTACGTACCTGAG-GGACAGACCGACTTTATCTTTGCGA    859

BSNT_05829___    854 TAATAGGTG--AGTCATTTGGCTTTATAGGCTGTGCAGTTGTTGTCATCA    901
                     |..|.||||  |||  |||||.|||.|||||||.||..|||..||..|||
RBAM_035370__    860 TTTTGGGTGAAAGT--TTTGGATTTTTAGGCTGCGCCATTGCGGTTGTCA    907

BSNT_05829___    902 TGTTCTTCTTTTTAATCTACAGGCTTGTCGTTCTGATAGACAAAATACAT    951
                     ||||.|||||||||||.|||||.|||||.||.|||||.|||....|.|||
RBAM_035370__    908 TGTTTTTCTTTTTAATTTACAGACTTGTGGTGCTGATTGACCGCTTGCAT    957

BSNT_05829___    952 CCGTTTAACCG-TTTCGCTTCTTTCTTTTGCGTTGGCTATACGGCGTTAA   1000
                     .|||||||||| |||.|| .|.||.||||||||.||.|.|||.||..|.|
RBAM_035370__    958 GCGTTTAACCGATTTGGC-GCGTTTTTTTGCGTAGGATTTACTGCACTTA   1006

BSNT_05829___   1001 TTGTGATCCACACATTCCAGAATATCGGAATGAACATCGGCATTATGCCT   1050
                     |.|||||.|||||.||||||||.|||||.|||||.||||||||||||||.
RBAM_035370__   1007 TCGTGATTCACACCTTCCAGAACATCGGGATGAATATCGGCATTATGCCG   1056

BSNT_05829___   1051 GTTACCGGGATTCCGCTGCTGTTTGTCAGCTATGGGGGAAGCTCGACACT   1100
                     ||||||||.|||||||||||||||||||||||||||||.||||||...||
RBAM_035370__   1057 GTTACCGGTATTCCGCTGCTGTTTGTCAGCTATGGGGGGAGCTCGGTGCT   1106

BSNT_05829___   1101 TTCCACGTTAATCGGATTTGGGATTGTATATAATGCAAGTGTGCAGCTGA   1150
                     |||.||.||||||.|.||.|||||.||||||||.||||||||||||||||
RBAM_035370__   1107 TTCTACATTAATCAGCTTCGGGATCGTATATAACGCAAGTGTGCAGCTGA   1156

BSNT_05829___   1151 CGAAATACAGAAGTTATCTTTTTAATTCTTAA   1182
                     |||||||.|.|||.||.||.||.|||||||||
RBAM_035370__   1157 CGAAATATAAAAGCTACCTGTTCAATTCTTAA   1188


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