Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05831 and RBAM_035390

See Amino acid alignment / Visit BSNT_05831 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05831___ywcE.1.9828.seq
#    -bsequence dna-align/RBAM_035390___ywcE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05831___ywcE-RBAM_035390___ywcE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05831___ywcE-RBAM_035390___ywcE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05831___ywcE
# 2: RBAM_035390___ywcE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 268
# Identity:     216/268 (80.6%)
# Similarity:   216/268 (80.6%)
# Gaps:          11/268 ( 4.1%)
# Score: 885.0
# 
#
#=======================================

BSNT_05831___      1 ATGATGGACATGTTTTTTGCTTACTTACTGGTTGCCAGCGCAACGCCTCT     50
                        ||||||||||||||||||||.||||||||.||.||||||||.||.||
RBAM_035390__      1 ---ATGGACATGTTTTTTGCTTATTTACTGGTCGCAAGCGCAACACCCCT     47

BSNT_05831___     51 CTTTATTTGGCTTGATAACAAAAAAGTCGCACTCTCAGCTATTCCGCCAA    100
                     ||||||.|||||.|||||||||||||||||.||.||.||.||.|||||||
RBAM_035390__     48 CTTTATCTGGCTGGATAACAAAAAAGTCGCTCTTTCGGCCATACCGCCAA     97

BSNT_05831___    101 TCATTTTAATGTGGGTATTCTTCTTCTTTTACGCAA-CAGAAAGCCTTTC    149
                     |.|||.|.||||||||.|||||||.||||||||||| ||| .|||||.||
RBAM_035390__     98 TTATTCTCATGTGGGTTTTCTTCTACTTTTACGCAACCAG-CAGCCTATC    146

BSNT_05831___    150 TCCACTTGGACACACTCTCATGATTATCTTGTTTGCCGTTAACGTCATTG    199
                     .||.||.||.|||||.||.|||||.|||.||||||||||.||||||||.|
RBAM_035390__    147 CCCTCTCGGCCACACACTTATGATCATCCTGTTTGCCGTCAACGTCATCG    196

BSNT_05831___    200 TCGCTCATATCGCCGCATTTATCATTTACGGCCTTCCGTATCTTCGCAGA    249
                     |.||.|||||||||||.|||||||||||||||||||||...||.|||.| 
RBAM_035390__    197 TTGCCCATATCGCCGCCTTTATCATTTACGGCCTTCCGCGCCTGCGCCG-    245

BSNT_05831___    250 AAGCGAAGCAGCTGA---    264
                       |.||||.|||..|   
RBAM_035390__    246 --GAGAAGAAGCCAATAA    261


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