Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05834 and RBAM_035410

See Amino acid alignment / Visit BSNT_05834 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05834___qoxC.1.9828.seq
#    -bsequence dna-align/RBAM_035410___qoxC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05834___qoxC-RBAM_035410___qoxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05834___qoxC-RBAM_035410___qoxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05834___qoxC
# 2: RBAM_035410___qoxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity:     543/616 (88.1%)
# Similarity:   543/616 (88.1%)
# Gaps:           2/616 ( 0.3%)
# Score: 2411.0
# 
#
#=======================================

BSNT_05834___      1 ATGGAACATGCAGAACACGGCAATTCTAACGCGCCTATGGAATATCAATC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_035410__      1 ATGGAACATGCAGAACACGGCAATTCTAACGCGCCTATGGAATATCAATC     50

BSNT_05834___     51 TGAAACCGGCAGACTTAATATTCTCGGGTTTTGGATCTTTTTAGGGGCAG    100
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_035410__     51 TGAAACCGGCAGACTCAATATTCTCGGGTTTTGGATCTTTTTAGGGGCAG    100

BSNT_05834___    101 AAATTGTGTTGTTCTCAACACTATTTGCAACCTTCTTCGTTCTTAAAAAC    150
                     |.||||||||||||||||||||||||||||||||||||||||||.|||..
RBAM_035410__    101 AGATTGTGTTGTTCTCAACACTATTTGCAACCTTCTTCGTTCTTCAAAGA    150

BSNT_05834___    151 AGAACAGCTGGAGGTGTCTTGCCAGACGAACTATTTGAAGTCAATCTGGT    200
                     ||||||||.|||||.|||||.||.|..|||.||||||||||.||.||.||
RBAM_035410__    151 AGAACAGCAGGAGGAGTCTTACCGGCTGAATTATTTGAAGTGAAGCTTGT    200

BSNT_05834___    201 AATGATTATGACGTTCTTGCTGCTGATCAGCAGCTTTACCTGCGGGATCG    250
                     .|||||.|||||.|||.||||.|||||||||||.||.|||||||||||||
RBAM_035410__    201 CATGATCATGACATTCCTGCTTCTGATCAGCAGTTTCACCTGCGGGATCG    250

BSNT_05834___    251 CTGTTCATGAAATGCGCCGCGGAAGTTTAAAAGGCGTAGTCATTTGGACA    300
                     ||||||||||||||||.||||||||||||||||||||.|||||||||||.
RBAM_035410__    251 CTGTTCATGAAATGCGTCGCGGAAGTTTAAAAGGCGTCGTCATTTGGACG    300

BSNT_05834___    301 ATTATCACTCTTCTTCTCGGTGCCGGCTTCGTCGGATGCGAGATCAACGA    350
                     ||.||.||.|||||||||||.|||||||||||||||||.|||.|.|||||
RBAM_035410__    301 ATCATTACGCTTCTTCTCGGCGCCGGCTTCGTCGGATGTGAGCTTAACGA    350

BSNT_05834___    351 GTTTGTTCACTATGTACATGAAGGAGCGGCTCTCAGTACAAGTGCGTTCT    400
                     |||..|.||||||||||||||||||||..|||||.||||||||||.||||
RBAM_035410__    351 GTTCATCCACTATGTACATGAAGGAGCATCTCTCGGTACAAGTGCTTTCT    400

BSNT_05834___    401 GGTCTGGATTCTTTGTTTTACTTGGAACTCACGGAACTCACGTAACAATC    450
                     |||||||||||||.||..|.||.|||||.||||||||.||||||||.|||
RBAM_035410__    401 GGTCTGGATTCTTCGTCCTTCTGGGAACGCACGGAACGCACGTAACGATC    450

BSNT_05834___    451 GGGATTTTCTGGATCACAGGAATTCTGA-TTCAGTTGAAGAAACGCGGCT    499
                     ||.||.||||||||..|.||.| |||.| |.||.||||||||||||||.|
RBAM_035410__    451 GGTATCTTCTGGATTGCCGGCA-TCTTACTGCAATTGAAGAAACGCGGAT    499

BSNT_05834___    500 TAACTCCGCAAACTTCATCTAAAATCTTTATCTCAAGCTTGTACTGGCAC    549
                     ||||.|||||.||.||.||.|||||||||||||||||.||.|||||||||
RBAM_035410__    500 TAACGCCGCAGACGTCTTCAAAAATCTTTATCTCAAGTTTATACTGGCAC    549

BSNT_05834___    550 TTCTTAGATGTTGTATGGATTTTCATCTTTACAGGTGTCTATCTCATGGG    599
                     ||||||||.|||||.|||||.||||||||||||||.|||||||||||.||
RBAM_035410__    550 TTCTTAGACGTTGTTTGGATCTTCATCTTTACAGGCGTCTATCTCATCGG    599

BSNT_05834___    600 ATTGGGGGGTCTGTAA    615
                     |||||||||.||.|||
RBAM_035410__    600 ATTGGGGGGACTATAA    615


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