Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05843 and RBAM_035460

See Amino acid alignment / Visit BSNT_05843 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:22
# Commandline: needle
#    -asequence dna-align/BSNT_05843___galK.1.9828.seq
#    -bsequence dna-align/RBAM_035460___galK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05843___galK-RBAM_035460___galK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05843___galK-RBAM_035460___galK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05843___galK
# 2: RBAM_035460___galK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1227
# Identity:     846/1227 (68.9%)
# Similarity:   846/1227 (68.9%)
# Gaps:          96/1227 ( 7.8%)
# Score: 2744.5
# 
#
#=======================================

BSNT_05843___      1 ATGCGGGAAG----AGCTAAAGGGGATA---TTTGCAAGTGTATTCGGAG     43
                     ||    ||||    |..||||   ||.|   |||||...|||||||||.|
RBAM_035460__      1 AT----GAAGCACAAAATAAA---GAAAGCGTTTGCTGATGTATTCGGGG     43

BSNT_05843___     44 AAAAAGAGGGATTACGGTTTTTTTTCGCACCTGGAAGAGTGAATCTGATT     93
                     ||...||||...|.||..||||.||.||.||.||.|||||||||||.||.
RBAM_035460__     44 AATCGGAGGACCTGCGCATTTTCTTTGCGCCCGGCAGAGTGAATCTCATC     93

BSNT_05843___     94 GGAGAACATACAGACTATAACGGCGGGCATGTATTTCCGTGCGCGCTGAC    143
                     |||||.|||||.||.||||||||.||.||.||.|||||.|||||||||||
RBAM_035460__     94 GGAGAGCATACGGATTATAACGGGGGCCACGTCTTTCCTTGCGCGCTGAC    143

BSNT_05843___    144 AATGGGTACATATGCTGCTGTTGCAGAAAGAAAAGACGGGCTTGTCCGGA    193
                     .||.|||||||||||.||.||....||.|||...|||.||||.|||.|.|
RBAM_035460__    144 GATCGGTACATATGCAGCCGTCCGGGAGAGAGGGGACAGGCTCGTCAGAA    193

BSNT_05843___    194 TGTATTCAGATAACTTTAGAAACGCAGGCATCAAGGAATGCAGCCTTGAC    243
                     ||||.||..||.|.||||.|.|.||.|||||.|||||||||||.||.||.
RBAM_035460__    194 TGTACTCTCATCATTTTAAAGATGCGGGCATAAAGGAATGCAGTCTCGAT    243

BSNT_05843___    244 GACATTCGCTATCAAAAAGAAGACGACTGGGCGAACTACCCAAAAGGCGT    293
                     .|.||.||||||||||||||.||||..|||||.|||||.||.|||||.||
RBAM_035460__    244 AATATCCGCTATCAAAAAGAGGACGGGTGGGCCAACTATCCGAAAGGGGT    293

BSNT_05843___    294 GATTTATGAATTTCAACAG-AGGGGATATGCAGTTCCCCATGGCTTTGAC    342
                     .||....||||.|| .|.| ||.||.|.|.|..||||.||.|||||.||.
RBAM_035460__    294 CATGGCGGAATGTC-TCGGCAGCGGTTTTTCCCTTCCGCACGGCTTCGAT    342

BSNT_05843___    343 ATTGTATTTTCAGGGAATATTCCAAACGGGGCGGGGCTGTCGTCTTCCGC    392
                     |||||.||.|..||.||.||.||.|||||.|||||||||||.|||||.||
RBAM_035460__    343 ATTGTGTTCTGGGGAAACATCCCGAACGGCGCGGGGCTGTCATCTTCGGC    392

BSNT_05843___    393 TTCTATTGAACTGCTGATGGGGGTCGTGCTCCAAAACTATTTTCAT---C    439
                     |||.||||||||..|.|.||.||||.|.|||   ||..|.|..|||   |
RBAM_035460__    393 TTCGATTGAACTTGTTACGGCGGTCATTCTC---AAGGAATGCCATGAGC    439

BSNT_05843___    440 CTGAAGTAGATGCGCTTGAGCTT-GTGAAAATGGCGCAGCATGCGGAAAA    488
                     .|||.|..|||..|||.|| ||| |||||..|.||.|||...||||||||
RBAM_035460__    440 TTGAGGCGGATATGCTCGA-CTTGGTGAAGCTCGCTCAGACGGCGGAAAA    488

BSNT_05843___    489 --CCATTTTATCGGCGTCAATTGCGGAATTATGGACCAATTTGCAATTGG    536
                       ||  |||||||||||||..||||||||.|||||.|||||.||.||.||
RBAM_035460__    489 TTCC--TTTATCGGCGTCAGCTGCGGAATAATGGATCAATTCGCCATCGG    536

BSNT_05843___    537 AATGGGGAAAAAACATCATGCGATGCTGCTGAACTGTGACACGCTTGACT    586
                     ||||||.||.||||||||||||||.||||||||.||.|..|||||...||
RBAM_035460__    537 AATGGGAAAGAAACATCATGCGATTCTGCTGAATTGCGGGACGCTCAGCT    586

BSNT_05843___    587 ATGAATATAGCAAACTC--AATGTCTCAGGCCTCGCGCTGGTCATCGCGA    634
                     .||||||||..||||||  |.||  ||.||.||..||.|.||.||.||.|
RBAM_035460__    587 TTGAATATACAAAACTCGGACTG--TCGGGGCTGTCGATCGTTATTGCAA    634

BSNT_05843___    635 ATACGAACAAAAAAAGAACATTGGCTGACTCAAGCTATAATACGAGACGC    684
                     ||||.||.||||||.||||..|.||.||||||.|.|||||||||||.|.|
RBAM_035460__    635 ATACCAATAAAAAACGAACGCTTGCAGACTCAGGTTATAATACGAGGCTC    684

BSNT_05843___    685 CAAGAATGCAATGATGCATTGCT---TGATCTGAAAAAAGGCCTCGATAT    731
                     .|.||.|||...||.||   |||   ||||||..|.||  ||    ||.|
RBAM_035460__    685 AAGGAGTGCGGGGAAGC---GCTTTGTGATCTTCAGAA--GC----ATCT    725

BSNT_05843___    732 TAC------AGCACTGGGCGACATCAAGCCTTCTGATTTCGATGCGCATT    775
                     |.|      |.|||||||.||..|.|..|||||.|.|||.||.||.||| 
RBAM_035460__    726 TTCCGTTCAATCACTGGGAGAGCTGACCCCTTCCGCTTTTGACGCCCAT-    774

BSNT_05843___    776 CCAGC----CTGATCCAAAATGAAACGAACAGACGCCGGGCAAAGCACGC    821
                        ||    |||||.||.||||||..|||||||||||||||.||.|||||
RBAM_035460__    775 ---GCGGAGCTGATTCAGAATGAAGTGAACAGACGCCGGGCGAAACACGC    821

BSNT_05843___    822 TGTATACGAAAATCACCGTGCTATCAAGACGGCCCATATGTTCAAAGAG-    870
                     .||.||.|||||||||||..|.||..||.|.|||.|.||||||    || 
RBAM_035460__    822 CGTCTATGAAAATCACCGCACAATAGAGGCCGCCGACATGTTC----AGT    867

BSNT_05843___    871 AACAATATAG----ATGAAATCGGGCAGTTAATGAAGGAATCCCACCTTT    916
                     |||||| .||    ||.|.|||||..|.|||||||.|||.||.||.||.|
RBAM_035460__    868 AACAAT-CAGCTTCATCATATCGGTGAATTAATGAGGGATTCGCATCTCT    916

BSNT_05843___    917 CATTGAAG-GATGACTATGAAGTAACATGCCCTGAACTTGATGAGCTTG-    964
                     | ||.|.| ||||||||.||.||.||..|.|.|||.||.|||...||.| 
RBAM_035460__    917 C-TTTACGCGATGACTACGAGGTGACGAGTCATGAGCTGGATACACTGGC    965

BSNT_05843___    965 TGTTTGCGGCATGGGATCACGAAGGTGTAATTGGATCAAGAATGACGGGA   1014
                     || ..|||||.|||...||||..||.||.||.||||||||.|||||||||
RBAM_035460__    966 TG-AAGCGGCCTGGCGCCACGGCGGGGTGATCGGATCAAGGATGACGGGA   1014

BSNT_05843___   1015 GCAGGCTTTGGCGGATGCACCATCAGCATTGTAAAAGATGA-----GTTC   1059
                     ||.||.||.|||||.||.||..||||.||.||.||.||.||     .|||
RBAM_035460__   1015 GCCGGTTTCGGCGGCTGTACGGTCAGTATCGTTAAGGACGATGCGGTTTC   1064

BSNT_05843___   1060 GTTGATGATTTTATTCAGAAGGTTGGAGACAGATATCAAGAAAAAACAGG   1109
                     |     |||||||||.|.|.||..||.|.|.|.|||.|.|||||.|||||
RBAM_035460__   1065 G-----GATTTTATTGAAACGGCAGGGGCCCGCTATGAGGAAAAGACAGG   1109

BSNT_05843___   1110 GCTCCGAGCGGACTTTTATGTCGCGGATATCGGAGAGGGAGCGAGAGAAC   1159
                     |.....|||.||||||||....||||||.||||||..|||||||||||||
RBAM_035460__   1110 GAGAAAAGCTGACTTTTACACGGCGGATGTCGGAGCCGGAGCGAGAGAAC   1159

BSNT_05843___   1160 TAAAGGGGGAGTGA-------------   1173
                     |||||||||| |||             
RBAM_035460__   1160 TAAAGGGGGA-TGACGATGGCAATTGA   1185


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