Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05852 and RBAM_035530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05852___ywbN.1.9828.seq
# -bsequence dna-align/RBAM_035530___ywbN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05852___ywbN-RBAM_035530___ywbN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05852___ywbN-RBAM_035530___ywbN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05852___ywbN
# 2: RBAM_035530___ywbN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1272
# Identity: 970/1272 (76.3%)
# Similarity: 970/1272 (76.3%)
# Gaps: 36/1272 ( 2.8%)
# Score: 3663.5
#
#
#=======================================
BSNT_05852___ 1 ATGAGCGATGAACAAAAAAAGCCAGAACAAATTCATAGACGGGACATTTT 50
|||||||||||||||||.|||..|.||||.||.||.||||||||..|..|
RBAM_035530__ 1 ATGAGCGATGAACAAAACAAGGAAAAACAGATCCACAGACGGGATGTCCT 50
BSNT_05852___ 51 AAAATGGGGGGCAATGGCGGGGGCAGCCGTTGCGATCGGTGCCAGCGGAC 100
.||.|||||.||..|.|||||.||.|||||.||..||||.||.|||||.|
RBAM_035530__ 51 GAAGTGGGGCGCCGTCGCGGGCGCCGCCGTCGCTGTCGGAGCGAGCGGCC 100
BSNT_05852___ 101 TCGGCGGTCTCGCTCCGCTTGTTCAGACTGCGGCTAAGCCATC------- 143
||||.||.|||||.|||| |.||||.|| |||| .||||.|
RBAM_035530__ 101 TCGGAGGACTCGCGCCGC-TCTTCAAAC--CGGC--GGCCACCGCTTCAA 145
BSNT_05852___ 144 -GAAAAAGGATGAAAAA---GAGGAGGAGCAGATTGTTCCGTTTTACGGA 189
|||.||.||||||||| ||....||.||.||.|||||.|||||||||
RBAM_035530__ 146 AGAAGAATGATGAAAAACGTGATCGTGATCAAATCGTTCCTTTTTACGGA 195
BSNT_05852___ 190 AAGCATCAGGCCGGAATCACAACTGCCCATCAGACGTATGTCTATTTTGC 239
|||||.||.||.|||||||||||.||.||||||||||||||.||||||||
RBAM_035530__ 196 AAGCACCAAGCGGGAATCACAACGGCACATCAGACGTATGTGTATTTTGC 245
BSNT_05852___ 240 TGCGCTGGATGTAACAGCAAAAGACAAAAGCGACATCAT-TACGTTATTT 288
.|||||.|||||.|...|||..||||||..|||..|||| |.|.|| ||.
RBAM_035530__ 246 AGCGCTTGATGTCATGTCAAGCGACAAAGCCGATGTCATCTCCCTT-TTC 294
BSNT_05852___ 289 AGAAACTGGACAAGTCTCACACAGATGCTGACATCTGGCAAGAAAATGTC 338
|.|.|.||||||||.||.||.|||.|||||||.||.||| |.|
RBAM_035530__ 295 AAACAATGGACAAGCCTGACGCAGCTGCTGACTTCAGGC--------GCC 336
BSNT_05852___ 339 ATC--------GGAGCAGAGAAATCAATATCTGCCCCCGCAGGATACAGG 380
.|| .||.||||.||||.|||||.||||.|||||||||||.||
RBAM_035530__ 337 GTCCCGTCGGGCGAACAGAAAAATAAATATATGCCTCCGCAGGATACCGG 386
BSNT_05852___ 381 TGAGTCTGC-TGATTTATCCCCTTCCAACTTAACGGTCACATTCGGATTT 429
.||||| || .|||.|..||||..|.||.||.||.||.||.|||||.||.
RBAM_035530__ 387 GGAGTC-GCAAGATCTGGCCCCGGCGAATTTGACCGTTACCTTCGGCTTC 435
BSNT_05852___ 430 GGGCCTGGCTTTTTTGAAAAAGACGGAAAGGACCGCTTCGGGCTGAAAAG 479
||.||.||.|||||.||.||||||||.||||||||.|||||.||||||..
RBAM_035530__ 436 GGCCCCGGGTTTTTCGAGAAAGACGGGAAGGACCGATTCGGACTGAAAGA 485
BSNT_05852___ 480 CAAAAAACCGAAGCACCTAGCCGCTCTTCCAGCGATGCCTAATGACAACC 529
.|||||||||||||||||.||||.|.||||..||||||||||.|||||.|
RBAM_035530__ 486 TAAAAAACCGAAGCACCTCGCCGATATTCCGCCGATGCCTAACGACAAGC 535
BSNT_05852___ 530 TGGATGAAAAGCAGGGAGGCGGGGACATCTGCATTCAAGTATGTGCAGAC 579
|.|||.|.||.||.||.|||||.||.|||..|||.|||||.||.||.||.
RBAM_035530__ 536 TCGATAAGAATCAAGGCGGCGGTGATATCGTCATACAAGTCTGCGCGGAT 585
BSNT_05852___ 580 GATGAGCAAGTGGCGTTTCACGCGCTGCGTAACCTGCTAAATCAAGCGGT 629
.||||.|||..|||||||||||||.||||.||||||.|.||.||.||.|.
RBAM_035530__ 586 AATGAACAAACGGCGTTTCACGCGGTGCGCAACCTGATGAAACAGGCAGC 635
BSNT_05852___ 630 CGGCACTTGTGAGGTCCGTTTTGTGAACAAAGGCTTTTTAAGCGGAGGAA 679
.|||...||.||.|||||||||.|.||.|||||.||.||||||||.||.|
RBAM_035530__ 636 AGGCGTGTGCGAAGTCCGTTTTCTCAATAAAGGTTTCTTAAGCGGCGGGA 685
BSNT_05852___ 680 AAAATGGCGAAACACCGCGCAACCTCTTCGGATTCAAAGATGGAACAGGC 729
||||.||.|||||.||||||||||||||||||||||||||.||.||.|||
RBAM_035530__ 686 AAAACGGGGAAACGCCGCGCAACCTCTTCGGATTCAAAGACGGCACCGGC 735
BSNT_05852___ 730 AACCAGAGCACGGAGGATGACAGCTTGATGAACTCGATCGTGTGGGTTCA 779
|||||.|||||..|||||||.|.|.|||||||.||||||||.||||||||
RBAM_035530__ 736 AACCAAAGCACAAAGGATGAAAACCTGATGAATTCGATCGTTTGGGTTCA 785
BSNT_05852___ 780 GTCCGGTGAGCCTGACTGGATGACGGGCGGCACCTATATGGCTTTCCGGA 829
.||.||.|||||.||||||||||||||||||||.||.|||||.||..|||
RBAM_035530__ 786 ATCAGGAGAGCCGGACTGGATGACGGGCGGCACGTACATGGCGTTTAGGA 835
BSNT_05852___ 830 AAATCAAAATGTTCCTTGAGATATGGGACCGCTCTTCCCTCAAGGATCAA 879
||||.||.|||||..|.||.||||||||.||.||.|||.|.|||||.|||
RBAM_035530__ 836 AAATTAAGATGTTTTTAGATATATGGGATCGTTCATCCTTGAAGGAACAA 885
BSNT_05852___ 880 GAGGATACCTTCGGCCGCAGAAAAAGCTCAGGGGCGCCTTTCGGACAGAA 929
|||||.||.|||||.||....|||||||||||.||||||||||||||..|
RBAM_035530__ 886 GAGGACACGTTCGGGCGGGTGAAAAGCTCAGGCGCGCCTTTCGGACAACA 935
BSNT_05852___ 930 AAAGGAAACAGATCCCGTGAAGCTGAATCAAATTCCGTCTAATTCGCACG 979
|||||||||.||||||||||||||||||||||||||..|..|.|||||.|
RBAM_035530__ 936 AAAGGAAACCGATCCCGTGAAGCTGAATCAAATTCCCGCCGACTCGCATG 985
BSNT_05852___ 980 TCAGTCTAGCGAAATCTACGGGAAAACAAATTTTGCGAAGAGCTTTCTCT 1029
||||..|.||.|||||.||.||.|.|||.|||.||||..|.|||||.||.
RBAM_035530__ 986 TCAGCGTGGCAAAATCAACCGGCAGACAGATTCTGCGCCGGGCTTTTTCC 1035
BSNT_05852___ 1030 TACACAGAAGGACTTGATCCGAAAACCGGCTATATGGATGCAGGTCTCCT 1079
||.||.||.|||.|||||||.|||||.||||||.|.||.|||||.||.||
RBAM_035530__ 1036 TATACGGACGGAATTGATCCAAAAACGGGCTATGTTGACGCAGGCCTGCT 1085
BSNT_05852___ 1080 GTTTATCAGTTTTCAAAAAAATCCCGACAATCAGTTTATCCCGATGCTGA 1129
|||||||.|.|||||||||.|.||.|||...||.|||.||||||||||||
RBAM_035530__ 1086 GTTTATCTGCTTTCAAAAAGACCCGGACCGCCAATTTGTCCCGATGCTGA 1135
BSNT_05852___ 1130 AGGCTCTTTCAGCAAAGGATGCGTTAAACGAATATACACAAACAATCGGT 1179
|||||.|..|.||||||||||||||.||.|||||.||||||||.|||||.
RBAM_035530__ 1136 AGGCTTTGGCGGCAAAGGATGCGTTGAATGAATACACACAAACGATCGGC 1185
BSNT_05852___ 1180 TCTGCTTTATATGCATGCCCAGGCGGCTGCAAAAAAGGAGAATATATTGC 1229
|||.|.||||..||.||.||.||||||||.|||||||||||||||||.||
RBAM_035530__ 1186 TCTTCCTTATTCGCCTGTCCCGGCGGCTGTAAAAAAGGAGAATATATCGC 1235
BSNT_05852___ 1230 CCAGCGTTTGCTGGAATCATAA 1251
|||..|..||||||||||.|.|
RBAM_035530__ 1236 CCAAAGGCTGCTGGAATCGTGA 1257
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