Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05586 and RBAM_035610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05586___mta.1.9828.seq
# -bsequence dna-align/RBAM_035610.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05586___mta-RBAM_035610.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05586___mta-RBAM_035610.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05586___mta
# 2: RBAM_035610
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity: 472/898 (52.6%)
# Similarity: 472/898 (52.6%)
# Gaps: 260/898 (29.0%)
# Score: 983.5
#
#
#=======================================
BSNT_05586___ 1 ------ATGAAATATCAAGTTAAACAAGTGGCGGA---GATATCAGGTGT 41
|||| ||||.|||.||||.||.|| ||| .||.||
RBAM_035610 1 ATGGGTATGA------AAGTAAAAGAAGTAGCTGAACTGAT---TGGAGT 41
BSNT_05586___ 42 TAGCATTCGGACGCTTCATCACTATGA-CAA-------TATTGAGCTTCT 83
.|||||.||.||.||.|||||.||.|| ||| |||||| ||
RBAM_035610 42 AAGCATACGTACTCTCCATCATTACGATCAAATCGGATTATTGA----CT 87
BSNT_05586___ 84 GAATCCTTCAG----CGCTTACTGATGCTGGGTATCG--TTTGTACAGTG 127
|.|||| || ||.|||.|.||.||||| |||.|.| ||
RBAM_035610 88 -----CCTCAGGAAACG---ACCGATTCCGGTTATCGGCTTTATTC--TG 127
BSNT_05586___ 128 ACGCAGA--CCTGGAAAGACTGCAGCAGATTTTATTTTTCAAGGAATTCG 175
|.| ||| |.||.|.|| |||||||||||..|||||||||||||..||
RBAM_035610 128 AAG-AGAATCTTGAACAG-CTGCAGCAGATACTATTTTTCAAGGAGCTC- 174
BSNT_05586___ 176 GGTTTCGT--TTGGATGAAATTAAAGAGATGCTGGATCATCCGAATTTTG 223
|.|||| | ||..|.||.||||||||.||..|..||..|||....|||.
RBAM_035610 175 GATTTC-TCCTTAAAAGAGATTAAAGAAATCATTAATAGTCCTTCATTTA 223
BSNT_05586___ 224 ACCGGAAAGCGGCACTTCA-GTCGCAAAAGGAGATATTGATGAAGAAAAA 272
||||.|..|.|||| ||.| .|..||||||.|.||.|||||..|||||..
RBAM_035610 224 ACCGAAGGGAGGCA-TTAATTTTACAAAAGAAAATGTTGATTGAGAAACG 272
BSNT_05586___ 273 ACAAAGAATGGATGAGATGATTCGAACAATTGA-----CAGGACGCTTTT 317
..|.|||.|.|||.|.||||||..|||.||.|| ||
RBAM_035610 273 GAATAGAGTCGATAAAATGATTGAAACCATCGATAAATCA---------- 312
BSNT_05586___ 318 GTCCA----TTGATGGAGGGGA----AACGATGAATAA----------GA 349
.||.| |||||||..|.|| .|.||.|||.|| ||
RBAM_035610 313 ATCAAACATTTGATGGGAGAGATTTGCATGACGAACAAAGAGCGGTTTGA 362
BSNT_05586___ 350 GGGATT---------------TATTTGCCGGATTAAGCAAGAAAGACATT 384
||||.| |.||| ||.|| |||||
RBAM_035610 363 GGGAATGAACTTCAATCATAATCTTT-----ATGAA-CAAGA-------- 398
BSNT_05586___ 385 GAAGAGCACCAGCAGAC-ATATGCTGATGAA---GTCAGAAAGATGTATG 430
|||.| |||.|| .|..|.||||.|| ||| |||
RBAM_035610 399 ----AGCTC--GCAAACGGTGGGGTGATCAACCTGTC-----GAT----- 432
BSNT_05586___ 431 GAAAGG-AAATCGCAGA---AGAAACA-----------GAG-AAAAGGA- 463
|||| ||||...||| |.||||| ||| ||||.||
RBAM_035610 433 --AAGGTAAATATTAGATTGAAAAACATGACTGATGGTGAGCAAAAAGAT 480
BSNT_05586___ 464 -CATCTGCATACTCGGCAGATGATTGGA--GC-ACGATCATGGCTGAATT 509
.|||| |||.|.|||| || |.|.||| .|.||||
RBAM_035610 481 TTATCT------------GATAAGTGGACTGCAATGTTCA---ATAAATT 515
BSNT_05586___ 510 TG-ATTCGAT-TTACAGACGAATTGCGGCGCGAATGAAGCATGGGCCCGA 557
|| |.||..| ||| ||.|||..| |.|| |.|||
RBAM_035610 516 TGCACTCCTTATTA---ACCAATCTC----CCAA---------GTCCC-- 547
BSNT_05586___ 558 TGATGCAGAGGTTCAGGCCGC--------AGTGG-GGGCATTTCGC---G 595
||||.||.||..|.|| ||||| ..|..||||.| |
RBAM_035610 548 -----CAGACGTACAAACAGCTATCAAAGAGTGGTTTGATTTTCTCAATG 592
BSNT_05586___ 596 ATCATATTTGCCACTATCATTACGATTGCACCCTCGACATTTTCAGAGGA 645
|..||.||.|..|.|||..||..||| |.|.|||.| |||
RBAM_035610 593 AAAATTTTGGTGAATATTCTTTTGAT---------GCCTTTTAC---GGA 630
BSNT_05586___ 646 CTCGGGGAAGTGTATATCACTGACGAGCGATTTACCGATTCA-------- 687
.|.||..||.|.||||| |||.|| |.|.||.||||
RBAM_035610 631 TTAGGTCAACTCTATAT---TGAAGA-----TAAACGCTTCACTAAGAAC 672
BSNT_05586___ 688 ATCAATCAATATGGAGAAGGTCTTGCC---GCTTTTTTGCGGGAGGCAAT 734
|||.||||.|||||.||||| .|||.| || |..||.|.||.||.||
RBAM_035610 673 ATCGATCAGTATGGTGAAGG-GTTGGCGAAGC--TCATGAGTGATGCCAT 719
BSNT_05586___ 735 CATCATTTACTGT-GACCATCAGGAAAACCCCCGGCCGTAA------- 774
.|..||||| |.| ||.|||||..|||| .||..|||.
RBAM_035610 720 TACAATTTA-TATAGATCATCAAAAAAA----GGGTGGTACCCATTAA 762
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