Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05891 and RBAM_035710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:24
# Commandline: needle
# -asequence dna-align/BSNT_05891___dltA.1.9828.seq
# -bsequence dna-align/RBAM_035710___dltA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05891___dltA-RBAM_035710___dltA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05891___dltA-RBAM_035710___dltA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05891___dltA
# 2: RBAM_035710___dltA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1558
# Identity: 1141/1558 (73.2%)
# Similarity: 1141/1558 (73.2%)
# Gaps: 92/1558 ( 5.9%)
# Score: 4159.5
#
#
#=======================================
BSNT_05891___ 1 ATGAAACTTTTACATGCTATTCAAACACATGCGGAAACTTATCCGCAAAC 50
||||||||..|..|||||||..|||||.|.||.||..|..|.|||||..|
RBAM_035710__ 1 ATGAAACTACTTGATGCTATAAAAACATACGCAGACGCCAAGCCGCAGGC 50
BSNT_05891___ 51 CGATGCCTTCCGCTCTCAAGGCCAGTCGCTCACGTATCAGGAATTATGGG 100
|||.||.||.||.||...||..||.||.|||||.||...|||||||||||
RBAM_035710__ 51 CGAAGCGTTTCGTTCCTTAGATCATTCCCTCACTTACGGGGAATTATGGG 100
BSNT_05891___ 101 AGCAGTCTGACCGCGCGGCTGCCGCGATCCAAAAACGCAT---------- 140
|...|||.||.||.|..||..|||..||.|||||| |||
RBAM_035710__ 101 ATTTGTCGGAGCGGGTTGCGTCCGGCATTCAAAAA--CATACAGCTGACG 148
BSNT_05891___ 141 -TTCTGGGGAAAAGAAATCTCCTATCCTTGTGTACGGCCACATGGAGCCG 189
||| ||||.|.|||.||||.||.|||||.||.|||||||||
RBAM_035710__ 149 GTTC---------GAAAGCGCCTGTCCTGGTTTACGGACATATGGAGCCG 189
BSNT_05891___ 190 CACATGATCGTTTCCTTCTTGGGAAGTGTCAAAGCGGGACATCCTTATAT 239
.|.|||||||||||.|||||.|||||.|||||||||||.|..|||||.||
RBAM_035710__ 190 AATATGATCGTTTCTTTCTTAGGAAGCGTCAAAGCGGGCCGCCCTTACAT 239
BSNT_05891___ 240 TCCGGTTGACCTGTCTATTCCGTCCGAACGGATTGCGAAAATTATCGAAA 289
.||.||.||..|.||.||||||.|.||.|||||.|..|||||.||.||||
RBAM_035710__ 240 CCCTGTCGATGTTTCCATTCCGGCGGAGCGGATCGTCAAAATCATTGAAA 289
BSNT_05891___ 290 GCTCTGGAGCAGAATTGCTGATCCATGCAGC----AGGACTCTCAATTGA 335
||||.||.|||||..||||.|| |||| .||.| ||
RBAM_035710__ 290 GCTCAGGCGCAGAGCTGCTTAT-----CAGCGTATCGGGC--------GA 326
BSNT_05891___ 336 TGCAGTC---------AGCCAGCAGATTCAGACAGTTTCTGCGGAAGAAC 376
||||||| |||.|.|.||||.|.||.|||.|..|.|||||.|
RBAM_035710__ 327 TGCAGTCGATACGGGAAGCAATCTGATTAAAACCGTTACGCCCGAAGAGC 376
BSNT_05891___ 377 T----GCTGGAAAACGAAG--GCAGCTCTGTCATCCAAGATCAATGGGTT 420
| |||| |||.|| ||||..| |||.||..||..|.|||||.
RBAM_035710__ 377 TTGCAGCTG----ACGGAGATGCAGACC--TCAGCCGTGAGAACTGGGTA 420
BSNT_05891___ 421 AAGGAACACGAGACGTTTTATATCATTTACACTTCCGGGAGCACAGGAAA 470
||.||.|..||.||||||||.||.||||||||.|||||.|||||.|||||
RBAM_035710__ 421 AAAGAGCTGGACACGTTTTACATTATTTACACGTCCGGCAGCACGGGAAA 470
BSNT_05891___ 471 TCCGAAAGGCGTGCAGATTTCCGCTGCGAATCTTCAAAGCTTCACAGACT 520
||||||.|||||||||||.||.||||..||.||.||||||||.||.||||
RBAM_035710__ 471 TCCGAAGGGCGTGCAGATATCGGCTGATAACCTGCAAAGCTTTACTGACT 520
BSNT_05891___ 521 GGATTTGTGCA--GACTTTCCAGTCAGCGGAGGAAAAATATTTTTAAACC 568
||| |.|||| ||.|||||.||..|||..||.||.|.|||.|||||||
RBAM_035710__ 521 GGA--TCTGCAGGGATTTTCCTGTGGGCGAGGGTAAGACATTCTTAAACC 568
BSNT_05891___ 569 AAGCACCGTTCTCATTTGATTTGTCTGTCATGGACCTATATCCGTGCCTT 618
||||.|||||.||.||||||||.||||||||||||.|.|..||||..|||
RBAM_035710__ 569 AAGCTCCGTTTTCTTTTGATTTATCTGTCATGGACATTTTCCCGTCGCTT 618
BSNT_05891___ 619 CAATCAGGCGGGACTTTACATTGCGT-------GACAAAGGATGCTGTGA 661
|||.|.||.||.||..|.||.||||| |||||| .|.|
RBAM_035710__ 619 CAAACGGGAGGTACGCTGCACTGCGTAACGAAAGACAAA-------ATCA 661
BSNT_05891___ 662 ACAAGCCGAAAGTCTTATTTGAAGAGCTGAAGAAGTCCGGGCTGAATGTG 711
|.||.||||||||..||||||||||||||.||||.|||...|||||.||.
RBAM_035710__ 662 ATAAACCGAAAGTACTATTTGAAGAGCTGGAGAAATCCAAACTGAACGTC 711
BSNT_05891___ 712 TGGACATCAACACCTTCCTTTGTGCAAATGTGCCTGATGGATCCGGGTTT 761
||||||||.||.||.||.||.||.||||||||.||||||||.||.||.||
RBAM_035710__ 712 TGGACATCGACGCCGTCTTTCGTCCAAATGTGTCTGATGGACCCCGGCTT 761
BSNT_05891___ 762 TTCACAGGATCTGCTGCCTCATGCGGACACATTTATGTTTTGCGGAGAGG 811
|.|.|||||.||.||||||.|.||.||...||||||||||||||||||.|
RBAM_035710__ 762 TACGCAGGAGCTCCTGCCTGAGGCAGAAGTATTTATGTTTTGCGGAGAAG 811
BSNT_05891___ 812 TTCTTCCGGTTTCTGTGGCAAAAGCGCTGCTTGAGCGTTTTCCGAA---- 857
..|||||||.|.|.||||||.|.|.||||.|..|.|||||||||||
RBAM_035710__ 812 CGCTTCCGGCTGCCGTGGCACAGGAGCTGTTAAACCGTTTTCCGAAGGCC 861
BSNT_05891___ 858 AGCGAAGATTTTTAATACGTACGGCCCGACTGAAGCGACAGTGGCTGTCA 907
.||| |.||.|||||.|||||.|||||||||.|.||.||.||.||||
RBAM_035710__ 862 CGCG----TATTCAATACATACGGTCCGACTGAAACAACGGTTGCCGTCA 907
BSNT_05891___ 908 CATCGGTTGAAATTACGGATGACGTCATCAGCCACAGCGAATCGCTTCCA 957
|.||.||||||||||||.|..|..|||||....|.|..|||||.||.||.
RBAM_035710__ 908 CCTCCGTTGAAATTACGCAGCAGATCATCGATGAAAATGAATCTCTGCCT 957
BSNT_05891___ 958 GTGGGCTTCGCCAAACCAGATATGAACATTTTCATTATGGATGAAGA-GG 1006
||.||.||.||.|||||.||||||.|.||.|||||.|||||||||.| ||
RBAM_035710__ 958 GTCGGTTTTGCAAAACCCGATATGGATATCTTCATCATGGATGAAAACGG 1007
BSNT_05891___ 1007 GACAGCCGCTTCCTGATGGAGAAAAAGGAGAAATCGTCATTGCAGGGCCG 1056
|| |...||||||.||.|||||||||||.||||||.||||.||.||.|||
RBAM_035710__ 1008 GA-ATAAGCTTCCGGACGGAGAAAAAGGGGAAATCATCATCGCGGGCCCG 1056
BSNT_05891___ 1057 AGTGTAAGCCGAGGCTACCTTGGTGAGCCAGAGCTGACGGAAAAAGCGTT 1106
||.||.|||..||||||.||.||.||.||....|||||||||||||||||
RBAM_035710__ 1057 AGCGTGAGCAAAGGCTATCTCGGAGAACCTTCTCTGACGGAAAAAGCGTT 1106
BSNT_05891___ 1107 TTTCTC--TCATGAAGGCCAGTGGGCATACCGAACTGGCGATGCCGGCTT 1154
||||.| || ||.||||||||||||||.|..||.||.||||||||.|.
RBAM_035710__ 1107 TTTCCCGATC--GACGGCCAGTGGGCATATCACACGGGTGATGCCGGTTA 1154
BSNT_05891___ 1155 TATTCAAGACGGTCAGATTTTCTGCCAAGGACGTTTGGATTTCCAAATTA 1204
|.||||.||.|||||||||||||||||||||||..|.||||||||.||||
RBAM_035710__ 1155 TGTTCAGGATGGTCAGATTTTCTGCCAAGGACGCCTTGATTTCCAGATTA 1204
BSNT_05891___ 1205 AACTTCACGGCTATCGAATGGAGCTGGAGGAAATCGAGTTCCATGTCAGA 1254
|.|||||||||||.||.||||||||||||||||||||..|.|||||.||.
RBAM_035710__ 1205 AGCTTCACGGCTACCGCATGGAGCTGGAGGAAATCGAAGTACATGTAAGG 1254
BSNT_05891___ 1255 CAGTCACAGTACGTTCGCTCTGCTGTCGTGATTCCTTATCAGCCAAACGG 1304
|||||.||.||.||.|||.|.||.||.||.||.||.||||||||.|||||
RBAM_035710__ 1255 CAGTCTCAATATGTGCGCACGGCGGTTGTCATCCCGTATCAGCCTAACGG 1304
BSNT_05891___ 1305 AACAGTTGAGTACCTGATCGCTGCTATTGTGCCTGAGGAGCATGAGTTCG 1354
|.|.||.||.||..|.||.||.||.||.||||||||..|.|||||.||.|
RBAM_035710__ 1305 ACCTGTCGAATATTTAATTGCCGCCATCGTGCCTGAAAAACATGATTTTG 1354
BSNT_05891___ 1355 AGAAGGAATTCCAGCTGACAAGCGCTATTAAAAAAGAGCTTGCCGCTTCT 1404
|.||.||||||||||||||||||||.|||||.|||||.||.||||||||.
RBAM_035710__ 1355 AAAAAGAATTCCAGCTGACAAGCGCCATTAAGAAAGAACTGGCCGCTTCG 1404
BSNT_05891___ 1405 CTTCCGGCATATATGATCCCGAGAAAATTTATCTATCAGGATCACATTCA 1454
||||||||.||.|||||.|||||||||||.||.|||||||||||||||||
RBAM_035710__ 1405 CTTCCGGCCTACATGATTCCGAGAAAATTCATTTATCAGGATCACATTCA 1454
BSNT_05891___ 1455 AATGACGGCTAACGGCAAAATTGACCGAAAACGCATTGGCGAAGAGGTTC 1504
||||||.||.|||||.|||||.|||||.||||||||||||||||||||||
RBAM_035710__ 1455 AATGACTGCGAACGGAAAAATCGACCGTAAACGCATTGGCGAAGAGGTTC 1504
BSNT_05891___ 1505 TTGTATGA 1512
||||||||
RBAM_035710__ 1505 TTGTATGA 1512
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