Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05898 and RBAM_035750

See Amino acid alignment / Visit BSNT_05898 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:25
# Commandline: needle
#    -asequence dna-align/BSNT_05898___ywaA.1.9828.seq
#    -bsequence dna-align/RBAM_035750___ywaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05898___ywaA-RBAM_035750___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-RBAM_035750___ywaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: RBAM_035750___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity:     886/1101 (80.5%)
# Similarity:   886/1101 (80.5%)
# Gaps:          21/1101 ( 1.9%)
# Score: 3539.0
# 
#
#=======================================

BSNT_05898___      1 ATGACTAAACAA-ACGATTCGCGTTGAATTGACATCAACAAAAAAACCGA     49
                     |||   |||||| || |||||.||||||||.||.|||.|.||||||||||
RBAM_035750__      1 ATG---AAACAAGAC-ATTCGTGTTGAATTCACTTCAGCCAAAAAACCGA     46

BSNT_05898___     50 AACCAGACCCAAATCAGCTTTCGTTCGGAAGAGTGTTTACAGACCACATG     99
                     ||||.|||||..||.|.|||.|||||||.|||.|.||.||.|||||.|||
RBAM_035750__     47 AACCGGACCCCCATGACCTTGCGTTCGGCAGAATTTTCACCGACCATATG     96

BSNT_05898___    100 TTTGTAATGGACTATGCGGCAGATAAAGGTTGGTACGATCCAAGAATCAT    149
                     |||||.|||||.||.|..||.|||.||||.|||||.|||||.|||||.||
RBAM_035750__     97 TTTGTTATGGATTACGACGCCGATCAAGGCTGGTATGATCCGAGAATTAT    146

BSNT_05898___    150 TCCTTATCAGCCCTTATCAATGGATCCGGCCGCAATGGTCTATCACTACG    199
                     |||.||||||.||.|.|||||||||||.||.||.|||||.|||||.||||
RBAM_035750__    147 TCCCTATCAGTCCATCTCAATGGATCCTGCGGCCATGGTTTATCATTACG    196

BSNT_05898___    200 GCCAAACCGTGTTTGAAGGG-TTAAAGGCTTACGTGTCAGAGGATGACCA    248
                     ||||||||||.||||||||| ||||| ||.||.||..|..|||||.|..|
RBAM_035750__    197 GCCAAACCGTTTTTGAAGGGCTTAAA-GCGTATGTAACGAAGGATCAGGA    245

BSNT_05898___    249 TGTTCTGCTTTTCAGACCGGAAAAAAATATGGAACGCCTGAATCAATCAA    298
                     .||.||.||.|||||||||||.|||||||||||.||||||||.||.||||
RBAM_035750__    246 AGTGCTTCTGTTCAGACCGGAGAAAAATATGGAGCGCCTGAACCAGTCAA    295

BSNT_05898___    299 ACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGTTCTTGAAGGC    348
                     |.||||||||.||||||||||..|||||||||||.|..||||||||||||
RBAM_035750__    296 ATGACCGCCTTTGCATCCCGCTCATTGATGAAGAGCTTGTTCTTGAAGGC    345

BSNT_05898___    349 TTAAAGCAGCTTGTCGCAATTGATAAAGACTGGATTCCAAATGCGGAGGG    398
                     .|.||.|||||.||.||.||.||.||||||||||||||.||.|||||.||
RBAM_035750__    346 CTGAAACAGCTCGTAGCCATCGACAAAGACTGGATTCCGAAAGCGGAAGG    395

BSNT_05898___    399 CACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGAGCCTTTCCTTG    448
                     |||.||||||||.|||||||||||.|||||.||.||.|||||||||||.|
RBAM_035750__    396 CACTTCCCTTTATATCCGTCCGTTTATCATTGCGACTGAGCCTTTCCTCG    445

BSNT_05898___    449 GTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTCTTTCTCCGGTC    498
                     ||||.||||||||.||||||||.|||||.||.|||||||||||.||||||
RBAM_035750__    446 GTGTAGCGGCATCCCATACGTACAAGCTGTTTATCATTCTTTCCCCGGTC    495

BSNT_05898___    499 GGCTCTTATTACAAAGAAGGCATTAAGCCGGTCAAAATCGCTGTTGAAAG    548
                     ||||||||||||||||||||||||||.|||||.||||||||.||.||||.
RBAM_035750__    496 GGCTCTTATTACAAAGAAGGCATTAAACCGGTAAAAATCGCCGTGGAAAA    545

BSNT_05898___    549 TGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAAATGCCAAAACCGCAG    598
                     .|||||.||.||.||.||.||||||||.||.|||||.||.||||||||.|
RBAM_035750__    546 CGAATTCGTGCGCGCCGTCAAAGGCGGCACCGGAAACGCGAAAACCGCCG    595

BSNT_05898___    599 GAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTCGCCGAAGAGAAAGGA    648
                     |.|||||.||.||||||.|.||||||||||||||.||.||.|||||.|||
RBAM_035750__    596 GCAACTACGCATCAAGCCTGAAAGCGCAGCAGGTTGCGGAGGAGAAGGGA    645

BSNT_05898___    649 TTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGAAGAAATACATCGAAGA    698
                     ||||||||.||..|.|||||.||||||||||||||.||||||||||||||
RBAM_035750__    646 TTTTCCCAGGTTTTATGGCTTGACGGCATTGAGAAAAAATACATCGAAGA    695

BSNT_05898___    699 AGTCGGAAGCATGAACATCTTCTTCAAAATCAACGGTGAAATCGTAACAC    748
                     ||||||.|||||||||||||||||||||||||.|||.||||||||.||.|
RBAM_035750__    696 AGTCGGCAGCATGAACATCTTCTTCAAAATCAGCGGCGAAATCGTGACGC    745

BSNT_05898___    749 CGATGCTGAACGGGAGCATCCTGGAAGGCATTACGCGCAATTCAGTCATC    798
                     ||..|||||||||.|||||.||.|||||.||||||.|.|||||.||||||
RBAM_035750__    746 CGGAGCTGAACGGAAGCATTCTTGAAGGAATTACGAGAAATTCCGTCATC    795

BSNT_05898___    799 GCCTTGCTTAAGCATTGGGGCCTTCAAGTTTCAGAACGAAAAATTGCGAT    848
                     .||.|.||.||.||||||||.||....||.||.||.||.||.|||.||||
RBAM_035750__    796 ACCCTTCTCAAACATTGGGGACTGACTGTGTCTGAGCGGAAGATTTCGAT    845

BSNT_05898___    849 CGATGAGGTCATCCAAGCCCATAAAGACGGC--ATCCTGGAAGAAGCCTT    896
                     ||||||..||||.||.||.|||...||||||  ||  ||||||||.|.||
RBAM_035750__    846 CGATGAAATCATTCAGGCGCATCGTGACGGCCGAT--TGGAAGAAACATT    893

BSNT_05898___    897 CGGAACAGGTACAGCAGCTGTTATTTCCCCAGTCGGCGAGCTGATCTGGC    946
                     ||||||.|||||.||.||.||.|||||.||.||||||||.|||||||||.
RBAM_035750__    894 CGGAACCGGTACGGCGGCGGTCATTTCTCCGGTCGGCGAACTGATCTGGA    943

BSNT_05898___    947 AGGATGAAACACTT-TCGATCAACAACGGTGAAACAGGAGAAATCGCAAA    995
                     |.|||||||..||| || |||..||.|||||||||.|||||.|||.|.||
RBAM_035750__    944 ATGATGAAAGTCTTGTC-ATCGGCAGCGGTGAAACCGGAGAGATCTCGAA    992

BSNT_05898___    996 AAAACTATATGACACGATTACAGGCATTCAAAAAGGCGCTGTCGCAGACG   1045
                     .|||.|.||.||.||.|||||||||||||||||||||||.|..||.||||
RBAM_035750__    993 GAAATTGTACGATACCATTACAGGCATTCAAAAAGGCGCGGAAGCCGACG   1042

BSNT_05898___   1046 AATTCGGATGGACGACCGAAGTCGCAGCGCTGACT----GAAAGCAAGTA   1091
                     ..|||||.||||||||.||||||||    ||.|||    ||||..||.||
RBAM_035750__   1043 TGTTCGGCTGGACGACGGAAGTCGC----CTCACTAAGCGAAACAAAATA   1088

BSNT_05898___   1092 A   1092
                     |
RBAM_035750__   1089 A   1089


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