Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05903 and RBAM_035780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:25
# Commandline: needle
# -asequence dna-align/BSNT_05903___licC.1.9828.seq
# -bsequence dna-align/RBAM_035780___licC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05903___licC-RBAM_035780___licC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05903___licC-RBAM_035780___licC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05903___licC
# 2: RBAM_035780___licC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1372
# Identity: 1095/1372 (79.8%)
# Similarity: 1095/1372 (79.8%)
# Gaps: 26/1372 ( 1.9%)
# Score: 4363.0
#
#
#=======================================
BSNT_05903___ 1 GTGAATAAAGTCAATCAGATCTTAGAAGAAAAGGTCATGCCTATAGCGGG 50
||||||||.||.||.|||.|.||||||||.||.||||||||.||.||.||
RBAM_035780__ 1 GTGAATAAGGTGAACCAGTTTTTAGAAGAGAAAGTCATGCCCATTGCCGG 50
BSNT_05903___ 51 AAGAATTGCGGGACAGCGTCATTTGCAGGCGCTGCGTGATGGTATCATCC 100
||.||||||....|||||.|||.||||.||..|||||||.||.|||||||
RBAM_035780__ 51 AAAAATTGCCTCCCAGCGGCATCTGCAAGCATTGCGTGACGGGATCATCC 100
BSNT_05903___ 101 TCACGATGCCCCTGATTATCATCGGTTCCTTTTTCCTCATCATTGGCAAC 150
||||.|||||.||.||||||||||||||.|||||.||.|||||.||||||
RBAM_035780__ 101 TCACCATGCCGCTTATTATCATCGGTTCATTTTTTCTGATCATCGGCAAC 150
BSNT_05903___ 151 CTCCCGATCCCGGGATACGCTGAGTTTATGGCAAAAACGTTTGGCAGCTC 200
||.|||||.||||||||.||.||.||.||||||||.|||||.||.|||.|
RBAM_035780__ 151 CTGCCGATTCCGGGATATGCGGATTTCATGGCAAAGACGTTCGGAAGCGC 200
BSNT_05903___ 201 CTGGTCTGAAAAACTGGCCTACCCAGTCGACGCGACCTTTGAAATTATGG 250
|||||||.||||||||...||.||.||.||.||||||||||||||.||||
RBAM_035780__ 201 CTGGTCTCAAAAACTGCAATATCCGGTTGATGCGACCTTTGAAATCATGG 250
BSNT_05903___ 251 GTCTTGTCGCCGCGTTCGGCATCGCCTACCGGCTCGCCGAGAAATACGGT 300
|||||||||||||.|||||.|||||||||||.||.|||||.||||||||.
RBAM_035780__ 251 GTCTTGTCGCCGCTTTCGGAATCGCCTACCGCCTGGCCGAAAAATACGGG 300
BSNT_05903___ 301 GTTGATGCCTTGTCGGCCGGAGCCATTTCCCTTGCGGCATTTTTATTAGC 350
||.|||||.||.||||||||.||.||.||..|.|||||.|||.|.||.||
RBAM_035780__ 301 GTGGATGCATTATCGGCCGGTGCGATATCTTTGGCGGCGTTTCTCTTGGC 350
BSNT_05903___ 351 AACACCTTATCAAGTGCCTTTTATGCCGGATGGCGCGACGAAAGAAATCA 400
|||.||.||..||||.||.|||.||||....|||||.|...|.|||||||
RBAM_035780__ 351 AACGCCGTACAAAGTTCCGTTTCTGCCTTCCGGCGCCAAAGAGGAAATCA 400
BSNT_05903___ 401 TGGTTGGCGGCGGGATTCCGCTTTCGCTCATGGGAAGCAAAGGCTTATTT 450
||||.||||||||.||.|||||.||.|||||||||||||||||..|.|||
RBAM_035780__ 401 TGGTCGGCGGCGGCATCCCGCTGTCTCTCATGGGAAGCAAAGGGCTGTTT 450
BSNT_05903___ 451 GTCGCCATGATTATCGCAATGGTGTCCACAGAGATTTACCGCCTTATTAT 500
|||||.|||||.|||||.|||.||||.||.||.|||||||||||.||.||
RBAM_035780__ 451 GTCGCGATGATCATCGCCATGCTGTCGACGGAAATTTACCGCCTGATCAT 500
BSNT_05903___ 501 CCAGCGCAATTTAGTCTTCAAAATGCCGGACGGTGTCCCGCCGGCGGTAA 550
||||||.|||||.||||||||||||||||||||.||.||.||.|||||.|
RBAM_035780__ 501 CCAGCGGAATTTCGTCTTCAAAATGCCGGACGGCGTGCCTCCTGCGGTCA 550
BSNT_05903___ 551 GCAAGTCATTTGTCGCGTTAATCCCCGGCTTTGCCGTCATCTTCCTGATT 600
||||.||.|||.||||.|||||.|||||.||||||||||||||.|||||.
RBAM_035780__ 551 GCAAATCGTTTATCGCTTTAATTCCCGGTTTTGCCGTCATCTTTCTGATC 600
BSNT_05903___ 601 TGGGCAGCCCGGCTGATTGTTGAAGCGACACCGTTTGAAAGCCTTCATAA 650
||||..||.||..|.|||||.||||||||.|||||||||||.||||||||
RBAM_035780__ 601 TGGGGCGCGCGTTTAATTGTCGAAGCGACGCCGTTTGAAAGTCTTCATAA 650
BSNT_05903___ 651 TATTGTAAGCGTTTTATTGGGGACTCCGCTTTCCATTCTGGGAGGAAGCC 700
.||||||||||||.||.|||||||.|||||.||.|||||.||.|||||.|
RBAM_035780__ 651 CATTGTAAGCGTTGTACTGGGGACACCGCTCTCGATTCTTGGGGGAAGTC 700
BSNT_05903___ 701 TTGGAGGAAGCCTTGTCGCCGAAGCCGTCAAAATGCTTTTATGGGCCTGC 750
|.||.||||||||..|.||||||||.||..|||||||.||.|||||.|||
RBAM_035780__ 701 TCGGCGGAAGCCTGATAGCCGAAGCGGTTCAAATGCTCTTGTGGGCGTGC 750
BSNT_05903___ 751 GGCCTTCACGGTGCAAACATTGTCGGCGGCGTCATGGCACCGATTTGGTA 800
||..|.|||||.||.|||||.|||||||||||||||||.|||||.||||.
RBAM_035780__ 751 GGATTACACGGGGCGAACATAGTCGGCGGCGTCATGGCGCCGATCTGGTT 800
BSNT_05903___ 801 CGGCGCAATGGATGCCAACCGGATCGCCTTCCAAGCCGGTGAGGAGCTTC 850
|||.||.|||||||||||||||||.||.||.||.||.||.||.|.|||||
RBAM_035780__ 801 CGGAGCGATGGATGCCAACCGGATTGCGTTTCAGGCGGGCGATGCGCTTC 850
BSNT_05903___ 851 CTAAGATTTTCACCCAGCAATTTTTCGATATCTGGGTCAATATCGGCGGA 900
|.||.||||||||||||||.|||||.||.||||||.||||.|||||||||
RBAM_035780__ 851 CGAATATTTTCACCCAGCAGTTTTTTGAAATCTGGATCAACATCGGCGGA 900
BSNT_05903___ 901 AGCGGCGCCACATTGGCACTGGTTGTCACGATGTTCCTGCGCGCCCGAAG 950
||||||||.|||.||||.||.||.|||||.|||||.||.||..|.|||||
RBAM_035780__ 901 AGCGGCGCGACACTGGCGCTCGTGGTCACCATGTTTCTCCGTTCGCGAAG 950
BSNT_05903___ 951 CAAACAAATGAAGCAGCTCGGGAAGCTTGCGGTCGGACCGGCCATCTTCA 1000
|||.||.|||||||||||.|||||.||.||..||||.||||||.||||.|
RBAM_035780__ 951 CAAGCAGATGAAGCAGCTTGGGAAACTCGCCATCGGGCCGGCCGTCTTTA 1000
BSNT_05903___ 1001 ATATTAACGAACCGATTATATTCGGAATGCCGATCGTCATGAACCCAATG 1050
|||||||.||.||||||||.||||||||||||||||||||||||||.|||
RBAM_035780__ 1001 ATATTAATGAGCCGATTATTTTCGGAATGCCGATCGTCATGAACCCGATG 1050
BSNT_05903___ 1051 C-TCTTACTTCCGTTTATCATCACACCGCTTGTCACAGTGACACTTACGT 1099
| |||.| |||||||.||.||||||||||||||||||.||....||||.|
RBAM_035780__ 1051 CTTCTCA-TTCCGTTCATTATCACACCGCTTGTCACACTGGTCTTTACCT 1099
BSNT_05903___ 1100 ACATCGGAATGAGCACCGGCCTTGTCGCAAAACCGGCGGGTATCGCAGTG 1149
|.|||||.||||||||.|||||.|||||.|||||.||.||.||.||.||.
RBAM_035780__ 1100 ATATCGGCATGAGCACTGGCCTCGTCGCCAAACCTGCCGGCATTGCCGTC 1149
BSNT_05903___ 1150 CCGTGGACCATGCCGCCGATCTTTTCAGGCTATTTGGCGACTGGAGGAAA 1199
||.|||||.|||||||||||.||.||.||||||.|.||.||.||.|||||
RBAM_035780__ 1150 CCATGGACGATGCCGCCGATTTTCTCCGGCTATCTTGCCACGGGCGGAAA 1199
BSNT_05903___ 1200 AGTCTCAGGCGCGGTCATGCAAGCCATTAATATTGCCGT----GTCCTTT 1245
|.|.|||||.||.||||||||.||.|||||.|| |.| | |||||
RBAM_035780__ 1200 AATATCAGGGGCTGTCATGCAGGCGATTAACAT---CATCACAG-CCTTT 1245
BSNT_05903___ 1246 GTTGTCTACTATCCATTCTTCAGAATGTGGGATAAGCAGAAGCTGAAAGA 1295
.|.||.||||||||.||||||||||||||||||..|||.|||||||||||
RBAM_035780__ 1246 ATCGTGTACTATCCGTTCTTCAGAATGTGGGATTCGCAAAAGCTGAAAGA 1295
BSNT_05903___ 1296 AGAAAACGATCTGGA------GCTGGTCAAAACGCCTGCAGCATCA--GA 1337
|||||||||.||.|| ||.|| ||||.||.|.| || ||
RBAM_035780__ 1296 AGAAAACGAACTTGAACAATCGCAGG------CGCCAGCCGTA-CAGGGA 1338
BSNT_05903___ 1338 TGACAAAGAAGCGGCTCTGTAG 1359
|||.||.||||.|..||||||
RBAM_035780__ 1339 -GACGAAAAAGCCGTGCTGTAG 1359
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