Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05906 and RBAM_035800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:25
# Commandline: needle
# -asequence dna-align/BSNT_05906___licR.1.9828.seq
# -bsequence dna-align/RBAM_035800___licR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05906___licR-RBAM_035800___licR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05906___licR-RBAM_035800___licR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05906___licR
# 2: RBAM_035800___licR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2007
# Identity: 1357/2007 (67.6%)
# Similarity: 1357/2007 (67.6%)
# Gaps: 171/2007 ( 8.5%)
# Score: 4418.5
#
#
#=======================================
BSNT_05906___ 1 ---------------------------------------ATGGCGGCTGA 11
.|.||.|||||
RBAM_035800__ 1 ATGCTTCATGGGCGGCTTCGTGAACTTCTGCGCTTGCTTTTAGCTGCTGA 50
BSNT_05906___ 12 AGCCCCGGTGACAAGTTCGTTTTTTGCGGCGCAAT-TAAACGTAACGATG 60
|.|.|||||.|||||.||..|..|.||.|| .||| ||||.|||||||.|
RBAM_035800__ 51 AACACCGGTTACAAGCTCAGTCATCGCTGC-AAATGTAAAGGTAACGACG 99
BSNT_05906___ 61 CGGACAGCCCGCAATGATATAAAGGAACTTCAA---GGTGT-GCTAAGCG 106
|||||.|.|||||||||.|||||||||||.||| ..||| |..||
RBAM_035800__ 100 CGGACGGTCCGCAATGACATAAAGGAACTGCAAACCATTGTAGAAAA--- 146
BSNT_05906___ 107 GCCACGGTGCCTTTGTACAATCGGTAAGAGGCTCCGGCTACAAGCTCCGC 156
.|||||.||.|...|.|||||.||.|||||...||||||.|||||.|
RBAM_035800__ 147 -ACACGGCGCATCCATTCAATCTGTCAGAGGGAGCGGCTATAAGCTGC-- 193
BSNT_05906___ 157 ATTGAT----GACGAGCAAGTATTCAGAACACT-GCTGCAAGATGTATTT 201
|||| .|.|||||....||.| ||.||| |||.||.|| ..||||
RBAM_035800__ 194 --TGATCCGGAATGAGCAGCCGTTTA-AAAACTGGCTTCAGGA-CAATTT 239
BSNT_05906___ 202 -CAGCAAAAAAAGGGCC-TGCCGGTATTGCCGGAGGAGAGAATGGCCTAT 249
|||| |.||.||..|| |||||.|.||.||.||.||..|.||.|..||.
RBAM_035800__ 240 CCAGC-AGAACAGCACCGTGCCGATTTTTCCCGATGAACGGATAGATTAC 288
BSNT_05906___ 250 CTTATGAAACGTCTGCTGCTGGCGGACCATTATCTCAAGCTCGATGAACT 299
|||||||||.|..||||.|||||.|||...||.||||||||.|||| |||
RBAM_035800__ 289 CTTATGAAAAGAATGCTTCTGGCCGACGGCTACCTCAAGCTGGATG-ACT 337
BSNT_05906___ 300 T-GCTGAAGAACTATTTATCTCAAAATCTACACTCCAAACGGATTTAAAG 348
| ||.||||||||.||.|||...|||||.|||||.|||.|.||||||||.
RBAM_035800__ 338 TGGCGGAAGAACTGTTCATCAGTAAATCCACACTTCAATCTGATTTAAAA 387
BSNT_05906___ 349 GAAGTAAAGAAACGTCTGCTGCCTTACCGCATCGTCATGGAAACACGTCC 398
|||||.||.|||||.||.|..||.||...||||.|..||||||||.|.||
RBAM_035800__ 388 GAAGTCAAAAAACGGCTCCGCCCCTATGACATCATTTTGGAAACAAGGCC 437
BSNT_05906___ 399 GAATTACGGCTTCAAGCTGCGCGGGGACGAGGTGCAGATGAGGTACTGCA 448
|||.||||||||.|||||||||||.||.|||.|.|...|..|.||.||.|
RBAM_035800__ 438 GAACTACGGCTTTAAGCTGCGCGGCGAAGAGCTCCGCCTCCGTTATTGTA 487
BSNT_05906___ 449 TGGCGGAGTACATTGTTGATGAAAGAGAAACGGAGATAGATGTTTTAAAT 498
|||||||.|||.|.||.||.||..|.||..|.|||...|||.|..|.|.|
RBAM_035800__ 488 TGGCGGAATACTTAGTGGACGACCGCGAGCCTGAGCCTGATCTCCTGAGT 537
BSNT_05906___ 499 GAAAAGGCTGATATTTTGCCAAAAGAAGAAATTGAGATCATCCGTTCCGC 548
||||||||.|.||||.||||.|||||.||.|||.|..|.|||||..|.||
RBAM_035800__ 538 GAAAAGGCCGGTATTCTGCCGAAAGACGACATTCATGTGATCCGCACAGC 587
BSNT_05906___ 549 CATCTTGAAAAAAATGAAAAACGACCGCATCCCTCTGTCCAACATGGGAC 598
|||..||||..|..|...||||.|....|||||.||.||...|.|.||.|
RBAM_035800__ 588 CATTATGAAGCAGGTTCGAAACCATAAGATCCCGCTTTCTTTCTTCGGCC 637
BSNT_05906___ 599 TGAATAACCTCATTATCCATATTGCTATCGCCTGTAAACGGATTAGAACG 648
||||.||.|||||.||||||||.||.||.|||||.|||||.||..|.||.
RBAM_035800__ 638 TGAACAATCTCATCATCCATATCGCCATTGCCTGCAAACGAATCCGGACA 687
BSNT_05906___ 649 GAAAACTATGTATCTCTTTTCCCGAAAGATATGGATCATATCCTGCATCA 698
|||||||||||||||||..|.|||.|||||.|..||.||||...||.|.|
RBAM_035800__ 688 GAAAACTATGTATCTCTCATTCCGGAAGATCTTCATGATATTAAGCTTGA 737
BSNT_05906___ 699 AAAGGAGTACCAGGCTGCAGAAGCCATCGTAAAAGAGCTGGAATCAAAGC 748
||..||.||.|||.|.||.||||||||||||||||||||.|||||...||
RBAM_035800__ 738 AACAGAATATCAGTCAGCGGAAGCCATCGTAAAAGAGCTTGAATCTGCGC 787
BSNT_05906___ 749 TTTCCGTTACATTTCCGAAAGAAGAGACGGCCTACATCACCATGCATCTC 798
||||.||.||.|||||..||.|.||.||.|||||.|||.||||.||.||.
RBAM_035800__ 788 TTTCGGTCACCTTTCCCGAACAGGAAACCGCCTATATCGCCATTCACCTG 837
BSNT_05906___ 799 CTTGGCACAAAACGAATGACACAATCACAATGCGGAGAGGACA----CAT 844
||.||.|||||.||.|||.|.||.||||||| .||| ||||.| |
RBAM_035800__ 838 CTCGGGACAAAGCGCATGGCCCAGTCACAAT-TGGA-AGGAAAAGAGC-- 883
BSNT_05906___ 845 TTTCA------ATAGAAGAGGAAACCGATCAGC----TGACACTTGCCAT 884
||.|| |||||.|.|||||| |||| ||||....|||||
RBAM_035800__ 884 TTACAAGGCTGATAGACGGGGAAAC----CAGCCGTTTGACGGAGGCCAT 929
BSNT_05906___ 885 GATCAAAGCTGTTGATCGTGAACTGAAGCTTGGCATCCTGCATGACAAAG 934
||||.||||..||||..|.||.||||||||.||.|||..|.|.|||||.|
RBAM_035800__ 930 GATCGAAGCCATTGAGAGGGAGCTGAAGCTCGGAATCACGGACGACAATG 979
BSNT_05906___ 935 AGCTGAAAATCGG--CTTGGCCCTGCATATGAAGCCGGCGATCAGCCGCA 982
||||| |||.||| ||| ||.||.||.||.|||||||||||.|.|||.|
RBAM_035800__ 980 AGCTG-AAAGCGGGTCTT-GCGCTCCACATCAAGCCGGCGATTAACCGAA 1027
BSNT_05906___ 983 ACCGATACGGCATGAATCTTCGAAATCCGATGCTGGCAGCGATCAAGGAA 1032
||||.|||||.|||||.||..||||.||||||||..|.||.||.||||||
RBAM_035800__ 1028 ACCGGTACGGAATGAACCTGAGAAACCCGATGCTCTCCGCCATAAAGGAA 1077
BSNT_05906___ 1033 CATTATCCACTCGCTTTTGAAGCCGGGA-TCATTGCCGGAATCGTGATAA 1081
.|||||||.|||||.||||||| ||||| |.|||||.|||||||||||.|
RBAM_035800__ 1078 AATTATCCGCTCGCATTTGAAG-CGGGAGTGATTGCGGGAATCGTGATCA 1126
BSNT_05906___ 1082 AGGAACAAACGGGTATTGAGATTCATGAAAACGAAATTGGATATTTGGCT 1131
||||.|||||.||.|||||.||||||||.||.||.||.|||||||||||.
RBAM_035800__ 1127 AGGAGCAAACCGGCATTGATATTCATGAGAATGAGATCGGATATTTGGCG 1176
BSNT_05906___ 1132 CTCCACTTTGGCGCCGCGATTGAACGAAAAAAAACAGAAAGCCCGCCGAA 1181
||.||.||.||.|||||.||.|||.|.|.|||.||.|||.|.|||||.||
RBAM_035800__ 1177 CTTCATTTCGGAGCCGCCATCGAAAGGAGAAAGACGGAACGGCCGCCTAA 1226
BSNT_05906___ 1182 ACGCTGTATCATTGTATGCGCATCGGGAGCCGGAAGCGCCCAGCTTCTGC 1231
||||||..|.|||||.||.||.||.||.|||||.|||||.||||||.|..
RBAM_035800__ 1227 ACGCTGCTTGATTGTCTGTGCGTCCGGCGCCGGCAGCGCACAGCTTTTAA 1276
BSNT_05906___ 1232 GCGAAAAACTGCGTTCCCATTTCGGCAAGCGGCTCGATATTCTTGGAACG 1281
|.|||||.||.|||||||..||||..|||||.||.||.||..|.||||||
RBAM_035800__ 1277 GAGAAAAGCTCCGTTCCCGGTTCGCAAAGCGTCTTGAAATCGTCGGAACG 1326
BSNT_05906___ 1282 GCTGAGTATTATAGTCTTGATCAAATGTCCTACGAATCAATTGATTTTGT 1331
|||||.||.|..||.|||||.||..|.||||..||.||.|||||||||||
RBAM_035800__ 1327 GCTGATTACTGCAGCCTTGACCAGCTTTCCTTTGAGTCGATTGATTTTGT 1376
BSNT_05906___ 1332 CATCAGTACCATTCCGATTAAAAAAGAGCTCCCTGTACCAGTACTGAAGG 1381
..||||.||..|.|||||.||||||||.||.||.||.||.|||.|.||||
RBAM_035800__ 1377 GGTCAGCACAGTGCCGATCAAAAAAGACCTGCCCGTTCCCGTATTAAAGG 1426
BSNT_05906___ 1382 TTAACACCATCTTAGGCGGAACTGACTTTACAAAAATAGAATCTATTCTG 1431
||.|.||..|.||.|||||....||.|||||||||||.||..|.||.|||
RBAM_035800__ 1427 TTCATACGCTGTTGGGCGGCGGGGATTTTACAAAAATCGACGCCATGCTG 1476
BSNT_05906___ 1432 AGTGATGAAAA---GGAAAAAGCCAATCG--CTACCTAAAAAAAGAACTC 1476
||.||||| |||| ||||.| ||..||.|||...||.||.
RBAM_035800__ 1477 ---GAAGAAAAGCGGGAA-----CAATTGAACTTTCTGAAACCGGAGCTG 1518
BSNT_05906___ 1477 GTTTTTTTTCAGGAGGATCTG----CGCTCAAAAGAAGAAGTGATTCAAT 1522
||.|||||.|||.|||||||| || ||.||.||.||.||.|..|
RBAM_035800__ 1519 GTATTTTTGCAGCAGGATCTGGAGACG----AAGGAGGACGTCATCCGTT 1564
BSNT_05906___ 1523 TTTTAGGGCAGAAAGCGGTCGAATGCGGCTTTGC--CAGAGAAGAAATC- 1569
||.|.||.|||.|.|..|..|||..||||.|.|| |.| |.||
RBAM_035800__ 1565 TTCTCGGACAGCAGGTTGCAGAAGCCGGCCTCGCTTCTG------ATTCT 1608
BSNT_05906___ 1570 ---ATAGATTCCATTTTTGAAAGAGAAGACATGTCGCCAACGTGTTTTGG 1616
|..|||||.|||||||||||.||||..||.||.||.|||.||||.||
RBAM_035800__ 1609 CTGACCGATTCTATTTTTGAAAGGGAAGCGATTTCTCCTACGAGTTTCGG 1658
BSNT_05906___ 1617 CAATCTTGTTGCCATCCCGCACCCGCTTGTTCCGCAGACGAAAACAACGT 1666
|||||||...||.||.|||||||||||.|||||||||||..|.||.||||
RBAM_035800__ 1659 CAATCTTACGGCGATTCCGCACCCGCTCGTTCCGCAGACAGACACGACGT 1708
BSNT_05906___ 1667 TTTGGGCTGTTTGTACGCTCAAAAAACCGATCGATTGGGAGAGTCAGCGA 1716
|||||||.||.||.|||||.||.||.|||||.||.||||.|..|.||||.
RBAM_035800__ 1709 TTTGGGCGGTATGCACGCTGAAGAAGCCGATTGACTGGGCGGATAAGCGT 1758
BSNT_05906___ 1717 GTTCAATTTGTCTGTTTGCTTTGTGTCGAAAAGGAGAACAAAGCTGACTT 1766
||.|||||||||||..||||.||.|||||.||.||.|.||||||.|||.|
RBAM_035800__ 1759 GTCCAATTTGTCTGCCTGCTCTGCGTCGAGAAAGAAAGCAAAGCCGACCT 1808
BSNT_05906___ 1767 GCAAAGC--ATGTATAAACTGCTTGGCAGCATTTTGGATGACCCGGCGGC 1814
.| ||| |||||.|||..|||.|||.||||.||.|||||.|||||.||
RBAM_035800__ 1809 CC--AGCATATGTACAAATGGCTCGGCGGCATGTTAGATGATCCGGCCGC 1856
BSNT_05906___ 1815 GGTGAACCAGCTGGTCAAATGCCGTTCGTATCAAGAGCTTTCGGATGTGT 1864
|||.|.||..||..|.||||||....|.|||||.|||.||| .|.|.||
RBAM_035800__ 1857 GGTAAGCCGTCTCTTAAAATGCACAACCTATCAGGAGGTTT--TACGAGT 1904
BSNT_05906___ 1865 TT-----GACCAAAAAATGCTGAGCTGA---------------------- 1887
.| ||| |||.|.|.|| .||
RBAM_035800__ 1905 ATTCAGAGAC----AAACGATCAG-AGAAAGACCGGGATACACCTTTTTT 1949
BSNT_05906___ 1887 ------- 1887
RBAM_035800__ 1950 CCGTTAA 1956
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