Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00917 and RBAM_035860

See Amino acid alignment / Visit BSNT_00917 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_00917___ydfA.1.9828.seq
#    -bsequence dna-align/RBAM_035860___ydfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00917___ydfA-RBAM_035860___ydfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-RBAM_035860___ydfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: RBAM_035860___ydfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1349
# Identity:     923/1349 (68.4%)
# Similarity:   923/1349 (68.4%)
# Gaps:          91/1349 ( 6.7%)
# Score: 3040.5
# 
#
#=======================================

BSNT_00917___      1 TTGACATCAATGATTTTGGCAGT-----ATTCATC--------TTTTTAT     37
                                    ||||.|||     .||.|||        |||||.|
RBAM_035860__      1 ---------------TTGGGAGTTGCGGTTTTATCAGCGCTGATTTTTGT     35

BSNT_00917___     38 --TAACTCTAGTATTGGTCATATGGCAGCCGAAAAATTTATCTATAGGGT     85
                       |.||.||.||.||.||||||||||||||||||.||.||||.||.||.|
RBAM_035860__     36 GCTGACACTTGTGTTTGTCATATGGCAGCCGAAACATGTATCAATCGGCT     85

BSNT_00917___     86 GGTCAGCCTGTGGAGGCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAAT    135
                     ||||.|||||.||.||.||.||..|.|||.|.||.||.||.|..||||..
RBAM_035860__     86 GGTCTGCCTGCGGCGGAGCGGTCCTCGCTTTGATCGCCGGAGCAGTCAGC    135

BSNT_00917___    136 TTTCATGATGT----GTTAACTGTGACAGGGATTGTTTGGAATGCGAC-C    180
                     .|.||.|||.|    |  ||  |||||.||.||.||.||||||||||| |
RBAM_035860__    136 CTGCACGATATCGCGG--AA--GTGACGGGAATCGTCTGGAATGCGACAC    181

BSNT_00917___    181 TTGGCTTTTGTGGCCATCATACTGATATCGTTAATTCTTGATAATATCGG    230
                     || ||.|||.|.|||||.||..|.||.||.|||||||||||.|.||||||
RBAM_035860__    182 TT-GCCTTTATCGCCATTATTATCATTTCATTAATTCTTGACAGTATCGG    230

BSNT_00917___    231 TTTCTTTGAATGGGCAGCGCTTCATATGGCTAAGGCTGCAAAAGGAAACG    280
                     |||.|||||.|||||.|||||.||||||||.|.|||.||.|||||.|.||
RBAM_035860__    231 TTTTTTTGAGTGGGCCGCGCTGCATATGGCCATGGCGGCCAAAGGCAGCG    280

BSNT_00917___    281 GTGTGCGGATGTTCGTTTATGTATCTCTATTAGGAGCTATTGTCGCCGCG    330
                     |..||||||||||..|.|||||.||..|.|||||.|||.|||||.||||.
RBAM_035860__    281 GGCTGCGGATGTTTCTCTATGTGTCGGTTTTAGGGGCTGTTGTCTCCGCC    330

BSNT_00917___    331 TTATTTGCAAATGACGGTGCAGCTCTTATATTGACACCAATCGTATTAGC    380
                     .|.|||||.||||||||.||.||.||.||.|||||.||.||||||.|.||
RBAM_035860__    331 CTGTTTGCCAATGACGGAGCGGCGCTCATTTTGACGCCCATCGTACTGGC    380

BSNT_00917___    381 GATGGTCAGAGCATTACATTTTAATGAAAAATTAGTTTTTCCTTTTATCA    430
                     ||||||..|.||.||..||||...||||||..|.||.|||||.|||||.|
RBAM_035860__    381 GATGGTGCGGGCTTTGAATTTACCTGAAAAGCTGGTCTTTCCGTTTATTA    430

BSNT_00917___    431 TTGCCAGCGGATTTATTGCGGATACCACTTCGCTTCCTTTAGTAGTGAGC    480
                     |.|||.|.||.||.||.||.||.|||||.|||||.||..|.||.||.|||
RBAM_035860__    431 TCGCCGGAGGGTTCATCGCCGACACCACCTCGCTCCCGCTCGTGGTCAGC    480

BSNT_00917___    481 AATTTGGTCAACATTGTTTCAGCGGACTATTTTCATAT----TACGTTTA    526
                     |||||||||||.||.||.||.|||||.||.||||||||    |||    |
RBAM_035860__    481 AATTTGGTCAATATCGTATCCGCGGATTACTTTCATATCGGATAC----A    526

BSNT_00917___    527 TTGATTATGCATCCAGAATGGTTGTCCCGTACTTGTTTTCGCTGCTGGCG    576
                     ||||.||||||||..|.|||.|.||.||..||.|.|||||..||..|||.
RBAM_035860__    527 TTGAATATGCATCACGCATGCTGGTGCCCAACCTCTTTTCTTTGGCGGCA    576

BSNT_00917___    577 AGCATCATTGTACTTTACCTTTTCTTTAGAAAAAGCATACCAAAACGCTA    626
                     |||||..|.||.||.||.||.|..||.|||||||.|||.||.|||||.|.
RBAM_035860__    577 AGCATTTTGGTGCTGTATCTCTATTTCAGAAAAAACATTCCGAAACGGTT    626

BSNT_00917___    627 TG--ATCTGACTGAGGTTAAAAAACCTGTTGAAGCAATTAAAGATCAAAA    674
                     ||  |.|.|.||  .||.|||.|.||||.....||.|||||.|||.|...
RBAM_035860__    627 TGACACCGGCCT--TGTGAAACATCCTGCATCCGCCATTAAGGATGAGCG    674

BSNT_00917___    675 CATGTTCAGACTGTCATGGTATATCTTAGGGCTGCTGTTA---ATTGGAT    721
                     |.|.|||.||.|.||||||..|.||.|  |||.| |.|||   ||.||.|
RBAM_035860__    675 CCTTTTCCGATTATCATGGGGTGTCCT--GGCCG-TTTTATTGATCGGGT    721

BSNT_00917___    722 ATTTTGCAAGTGAATTTTTTTCTATCCCTGTATCAGTGGTAGCGGGCAGC    771
                     ||||.|..||.|...|..|.||.||.||.||.||..|.||.||.|||..|
RBAM_035860__    722 ATTTCGTCAGCGCGCTGCTGTCGATACCCGTTTCCTTCGTTGCCGGCTCC    771

BSNT_00917___    772 ATTGCGATCATTTTCTTAAT-----CGCTGCGCAAAAGAGTCCGGCCGTC    816
                     ||.|||.|||||||..|.||     |||.|||     .||.||.||||||
RBAM_035860__    772 ATCGCGGTCATTTTTCTCATTCTGGCGCAGCG-----AAGCCCCGCCGTC    816

BSNT_00917___    817 CATACAAAGAAAGTGGTGAAAGAGGCGCCATGGGCTATCGTATTCTTTTC    866
                     |.|.|.||..||||..|.||.||.||.||.|||||.|||||.||.|||||
RBAM_035860__    817 CCTGCGAAACAAGTCATCAAGGACGCCCCGTGGGCCATCGTGTTTTTTTC    866

BSNT_00917___    867 AATTGGCATGTACGTTGTTGTGTATGGTGTCCGAAATGCCGGATTAACGG    916
                     ..|.||||||||.|||||.|||||.||..|.||.|||||||||.|.||||
RBAM_035860__    867 TGTCGGCATGTATGTTGTCGTGTACGGCTTGCGGAATGCCGGACTGACGG    916

BSNT_00917___    917 ATGTCCTTTCAGATGTGATTCAAGCCGCAGCTGATCAAGGATTGTTTGCT    966
                     ||.|.|||||..|..|.||.||....||.||.|||||.||.||||||||.
RBAM_035860__    917 ATCTTCTTTCTCAGCTTATACAGAAAGCGGCGGATCACGGTTTGTTTGCG    966

BSNT_00917___    967 GGGACAATTGGAATGGGCTTTATTGCGGCGATTCTTTCTTCCATTATGAA   1016
                     ||.|||.|.||||||||.|||||.||||||||.||.||.|||.|||||||
RBAM_035860__    967 GGCACACTCGGAATGGGGTTTATCGCGGCGATCCTCTCCTCCGTTATGAA   1016

BSNT_00917___   1017 TAACTTGCCGACTGTTATGATTGACGCATTGGCTATTGCCGGTACAGACA   1066
                     ||||.|||||||.||.|||||||||||..|.||.||...|||.||.|.||
RBAM_035860__   1017 TAACCTGCCGACGGTGATGATTGACGCCATAGCCATCAGCGGAACGGGCA   1066

BSNT_00917___   1067 CACATGGGATGATGAGAGAAGCGCTTATTTATGCAAATGTGATCGGTTCA   1116
                     |.||.|||.|||||||||||||..|.|||||.||.|||||.||||||||.
RBAM_035860__   1067 CTCACGGGCTGATGAGAGAAGCATTGATTTACGCGAATGTTATCGGTTCG   1116

BSNT_00917___   1117 GATTTAGGGCCTAAAATAACACCGATTGGTTCCTTGGCGACATTATTATG   1166
                     ||..|.|||||.|||||.||.|||||.||.||..|||||||.||.|||||
RBAM_035860__   1117 GACCTCGGGCCGAAAATTACGCCGATCGGGTCGCTGGCGACGTTGTTATG   1166

BSNT_00917___   1167 GCTTCATGTTCT--TTCGCACAAAGGTATGAAGATTTCCTGGGGCACGTA   1214
                     |||.||.||.||  ..||.|.|||.|  ||||.|||||||||||.|.|||
RBAM_035860__   1167 GCTCCACGTGCTGAGCCGGAAAAACG--TGAAAATTTCCTGGGGAATGTA   1214

BSNT_00917___   1215 TTTTAAAACAGGAATTATCCTCACGATACCCACTTTATTGATCACACTTG   1264
                     |||.||.|||||..|.||..|.||.||.||.||.|||||.|||||.||..
RBAM_035860__   1215 TTTCAAGACAGGTCTGATATTAACCATTCCGACGTTATTCATCACCCTGA   1264

BSNT_00917___   1265 TCGGCCTGTATATTTGGCTGCTGATAATCCAT-----TCTTGTTTCTAA   1308
                     ||||.||.|||.|.||||||.|        ||     .||||.      
RBAM_035860__   1265 TCGGACTTTATTTATGGCTGTT--------ATGGCTCGCTTGA------   1299


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