Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01001 and RBAM_035870

See Amino acid alignment / Visit BSNT_01001 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01001.1.9828.seq
#    -bsequence dna-align/RBAM_035870___ydhM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01001-RBAM_035870___ydhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01001-RBAM_035870___ydhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01001
# 2: RBAM_035870___ydhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     217/321 (67.6%)
# Similarity:   217/321 (67.6%)
# Gaps:          51/321 (15.9%)
# Score: 788.0
# 
#
#=======================================

BSNT_01001         1 ---------------------------------ATGTCTACCAG-TTTAT     16
                                                      |||||.||||| .||.|
RBAM_035870__      1 ATGAAAAGAATTTTATTAGCCTGCAGCTCAGGCATGTCCACCAGCCTTCT     50

BSNT_01001        17 TGGTGACAAAAATGAAGGAATACGCACAGTCTATCGGTGAGGAAGCAGAG     66
                     | ||.||.||||||.||.|.|||||.|..||.||||||||||||||.|||
RBAM_035870__     51 T-GTTACGAAAATGCAGAATTACGCCCGCTCCATCGGTGAGGAAGCTGAG     99

BSNT_01001        67 ATTTGGGCTGTTGGCCAGGATAAAGCAAAAGAAGACATGAGAAAAGCGGA    116
                     ||||||||.||.||.|||||||||||||||||||..||||.|.|.||.||
RBAM_035870__    100 ATTTGGGCAGTCGGACAGGATAAAGCAAAAGAAGCGATGAAAGATGCAGA    149

BSNT_01001       117 TGCCGTTTTGATCGGTCCGCAAATGAGCTTTCTGAAAAGCGAACTCCAAA    166
                     .|.|||..|||||||.|||||.|||||.|||.|.|||.|.||.||.||||
RBAM_035870__    150 CGTCGTACTGATCGGCCCGCAGATGAGTTTTTTAAAAGGTGAGCTTCAAA    199

BSNT_01001       167 AAGAAGCGGA------TCA-ATACAACATTCGGGTTGAAGTCATTGACAT    209
                     ||||.|||||      ||| || ||.|      |||||.||.||||||||
RBAM_035870__    200 AAGAGGCGGACCCGCTTCACAT-CACC------GTTGATGTGATTGACAT    242

BSNT_01001       210 GATGGCCTACGGAATGGCAGATGGGAAAAAAGCGTATGAGCAGG-CATTG    258
                     ||||||.|||||.||||.|||.||.||||||||.||.||.|||| |.|||
RBAM_035870__    243 GATGGCTTACGGCATGGGAGACGGCAAAAAAGCATACGAACAGGCCGTTG    292

BSNT_01001       259 TCCTTAATGGTGAATCAATAA    279
                      ||||.||.|.|||..|||||
RBAM_035870__    293 -CCTTGATAGAGAACAAATAA    312


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