Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05962 and RBAM_036120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05962___yxjG.1.9828.seq
# -bsequence dna-align/RBAM_036120___yxjG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05962___yxjG-RBAM_036120___yxjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05962___yxjG-RBAM_036120___yxjG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05962___yxjG
# 2: RBAM_036120___yxjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1149
# Identity: 903/1149 (78.6%)
# Similarity: 903/1149 (78.6%)
# Gaps: 24/1149 ( 2.1%)
# Score: 3510.5
#
#
#=======================================
BSNT_05962___ 1 ATGTCACAACAAACAACACCCGCAGAACAAAAAT------CACTTCAAAG 44
||||||||.||| |||| ||||||||..|| |.||||.|||
RBAM_036120__ 1 ATGTCACAGCAA--AACA----CAGAACAACCATTGCATACGCTTCTAAG 44
BSNT_05962___ 45 AAAAAAACCGCCGTTTCGCGCGGATCAAGTCGGAAGCCTGTTGAGATCTG 94
||||||.||||||||||||||||||||.||||||||.|||.||.|..|.|
RBAM_036120__ 45 AAAAAACCCGCCGTTTCGCGCGGATCAGGTCGGAAGTCTGCTGCGGCCGG 94
BSNT_05962___ 95 AGCCCGTTAAAAAAGCGCGGCTGCAAAAAGCGGCCGGCGATATTACGGCT 144
.|.|.||.||..||||.||.|||||||.||||||.||.||.|||.||||.
RBAM_036120__ 95 CGGCTGTGAAGCAAGCCCGCCTGCAAAGAGCGGCGGGTGAGATTTCGGCA 144
BSNT_05962___ 145 GAGCAGCTTCGCCAGATCGAAAACGATGAAATTATCCGCATTGTGGAAAA 194
||.|||||.|||.|.|||||||||.|.|||||.|||||||.||||.||||
RBAM_036120__ 145 GAACAGCTGCGCGAAATCGAAAACAAAGAAATCATCCGCAGTGTGAAAAA 194
BSNT_05962___ 195 ACAGAAGGAAACCGGCCTGAACGTCGTGACAGACGGTGAATTCCGCAGAG 244
.|||||.|||||||||||.||.||||||||.|||||.|||||||||.|.|
RBAM_036120__ 195 GCAGAAAGAAACCGGCCTCAATGTCGTGACTGACGGCGAATTCCGCCGTG 244
BSNT_05962___ 245 CATGGTGGCACTTTGATTTCCTGGAAAACTTAGATGGCGTTGAGCCGTTT 294
|.||||||||.||||||||.||.|||||.|||||.|||||.||..|||||
RBAM_036120__ 245 CCTGGTGGCATTTTGATTTTCTCGAAAATTTAGACGGCGTCGAAGCGTTT 294
BSNT_05962___ 295 ACTCCTGAGCAA--GGCATTCAATTCCATAACGTACAGACAAAAGCACGC 342
||.||||| || ||||||||.||.||.|||||||||||.|||||.|||
RBAM_036120__ 295 ACGCCTGA--AAGCGGCATTCAGTTTCACAACGTACAGACGAAAGCGCGC 342
BSNT_05962___ 343 GGCATTAAAGTCACAGGTGATATCGACTTTTCAACTCACCCAATGCTTGA 392
|||||||||||.||.||.|||||.||.|||||....||.||.|||||.||
RBAM_036120__ 343 GGCATTAAAGTAACGGGAGATATTGATTTTTCTCAGCATCCGATGCTCGA 392
BSNT_05962___ 393 AGATTACTCATTTCTCCATAGCATTGCCGGTGACGCGACGCCAAAGATGA 442
||||||...|||.||.||.|||||||||||.||.||....||.||.||||
RBAM_036120__ 393 AGATTATAAATTCCTGCACAGCATTGCCGGCGATGCTGTTCCGAAAATGA 442
BSNT_05962___ 443 CGATTCCAAGCCCGAATATGCTGTTTTTCCGCGGAAAATTGGAAAAAGGT 492
|.||.|||||.|||||||||||||||||||||||||||||||||||||..
RBAM_036120__ 443 CCATCCCAAGTCCGAATATGCTGTTTTTCCGCGGAAAATTGGAAAAAGCG 492
BSNT_05962___ 493 GCATACAAAAACGACTATCACCTTTTCCAGCATGATGTATCCAAAGCATA 542
||.|||.|.||.||.||..|.|..||.|||||.|||||.||.|||||.||
RBAM_036120__ 493 GCTTACCAGAATGATTACAAACAATTTCAGCACGATGTGTCAAAAGCGTA 542
BSNT_05962___ 543 TAAAAAAGCGATTCAAGCGTTTTATGACAGAGGCTGCCGCTACCTCCAGC 592
||||||||||||||||||.||.||||||...||.|||||||||||.||||
RBAM_036120__ 543 TAAAAAAGCGATTCAAGCTTTCTATGACGCCGGGTGCCGCTACCTTCAGC 592
BSNT_05962___ 593 TTGATGATACAGCGTGGGCCGTTTTCTTATCTGAA-AAAGGCTTAAAACA 641
|.|||||.||.||.|||||||||||||||||.||| ...||||| ...||
RBAM_036120__ 593 TCGATGACACCGCATGGGCCGTTTTCTTATCAGAAGCGGGGCTT-CGTCA 641
BSNT_05962___ 642 AATCGAAGCGTTCGGAACAACGCCTGACGAGCTTCGTCAGCTGTTTGCGA 691
.||.|||||.|||||.||.|||||.||.|||||.||..||||||||||..
RBAM_036120__ 642 GATTGAAGCTTTCGGCACGACGCCGGATGAGCTGCGCAAGCTGTTTGCCG 691
BSNT_05962___ 692 AATCCATTAATGACGCGATTGCA--GACCGTCCTGATGACTTGACCGTAA 739
..||||||||||||||.|| || ||.||.|||||.||..|||..||.|
RBAM_036120__ 692 CTTCCATTAATGACGCCAT--CAAGGATCGCCCTGACGATCTGAAGGTTA 739
BSNT_05962___ 740 CCATGCATATTTGCCGCGGCAACTTCCAGTCCACTTGGACAGCGGAAGGC 789
|.||||||||.|||||||||||||||||.|||||||||||.||.||||||
RBAM_036120__ 740 CGATGCATATCTGCCGCGGCAACTTCCAATCCACTTGGACGGCTGAAGGC 789
BSNT_05962___ 790 GGCTATGACGCAGCAGCCGAAACCATTTTTGAC-GGCTTGAATCTTGACG 838
||||||||.|||||.||.|||||.||||||||| |||||| |.|||||||
RBAM_036120__ 790 GGCTATGATGCAGCGGCTGAAACGATTTTTGACGGGCTTG-ACCTTGACG 838
BSNT_05962___ 839 GCCTTTTCTTAGAGTATGATGATTCACGCTCAGGCGGATTTGAGCCGCTC 888
|..|.|||.|.||.|||||||||||.|||||.|||||.|||||.||||||
RBAM_036120__ 839 GATTGTTCCTGGAATATGATGATTCCCGCTCCGGCGGCTTTGAACCGCTC 888
BSNT_05962___ 889 CGTTACGTAAAACGGCCTGATCTTCAGCTTGTTCTTGGCTTAGTGACATC 938
|||||.||.|||||..||||||||||||||||.||||||||..|.||.||
RBAM_036120__ 889 CGTTATGTCAAACGCTCTGATCTTCAGCTTGTGCTTGGCTTGATTACGTC 938
BSNT_05962___ 939 TAAATTCGGTGAGCTTGAACATCCGGACGATGTAAAACGCCGTATCGAAG 988
.|||...||.||.||||||.|...|||||...|.||||||||.||.||||
RBAM_036120__ 939 GAAACATGGCGAACTTGAAGACAAGGACGCGATTAAACGCCGCATTGAAG 988
BSNT_05962___ 989 AAGCATCCCGTTATGTAAGCTTAGACCAGCTTTGCCTCAGCCCTCAATGC 1038
|.||.||.|..|||||.||..|.||.|||||||||||||||||.||||||
RBAM_036120__ 989 AGGCTTCACAATATGTCAGTCTGGATCAGCTTTGCCTCAGCCCGCAATGC 1038
BSNT_05962___ 1039 GGATTCGCTTCAACTGAGGAAGGCAACAAGCTGACTGAAGAACAGCAATG 1088
||||||||.||.|||||||||||.|||..|.|.||.||||||||||||||
RBAM_036120__ 1039 GGATTCGCCTCCACTGAGGAAGGAAACCTGATCACAGAAGAACAGCAATG 1088
BSNT_05962___ 1089 GGCGAAGCTCCGCCATGTGGTTGAGATCGCTAATGATGTTTGGAAATAA 1137
||||||.||.||||||||.||..|.||.||...|||.||.|||||||||
RBAM_036120__ 1089 GGCGAAACTGCGCCATGTCGTCAACATTGCCGGTGAAGTCTGGAAATAA 1137
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