Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06027 and RBAM_036360

See Amino acid alignment / Visit BSNT_06027 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:30
# Commandline: needle
#    -asequence dna-align/BSNT_06027___bglP.1.9828.seq
#    -bsequence dna-align/RBAM_036360___bglP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06027___bglP-RBAM_036360___bglP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06027___bglP-RBAM_036360___bglP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06027___bglP
# 2: RBAM_036360___bglP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1873
# Identity:    1415/1873 (75.5%)
# Similarity:  1415/1873 (75.5%)
# Gaps:          80/1873 ( 4.3%)
# Score: 5200.0
# 
#
#=======================================

BSNT_06027___      1 ATGGATTATGATAAATTATCGAAGGACATATTACAACTCGTAGGCGGTGA     50
                     |||||.|||.|||||.||||.||.||.|||||||||||.||.|||||.||
RBAM_036360__      1 ATGGACTATCATAAAATATCAAAAGAGATATTACAACTTGTCGGCGGGGA     50

BSNT_06027___     51 AGACAACGTTCAGCGCGTGATTCACTGCATGACGAGGCTGCGTTTTAATC    100
                     .||.||.||||||.|.||.||.||.|||||||||.||||.|||||||||.
RBAM_036360__     51 GGAGAATGTTCAGAGTGTCATCCATTGCATGACGCGGCTTCGTTTTAATT    100

BSNT_06027___    101 TTCATGACAACGCGAAGGCGGATCGCAGTCAGCTGGAGCAGCTGCCGGGG    150
                     |..|||||||.|||||.||.|||||.||...||||||.|||..|...||.
RBAM_036360__    101 TGTATGACAATGCGAAAGCAGATCGGAGCGGGCTGGAACAGACGGAAGGC    150

BSNT_06027___    151 GTGATGGGCACCAATATCAGCGGCGAGCAGTTTCAAATCATTATCGGAAA    200
                     ||||||||.||.|||||||||||||.|||.|||||.||||||.||||.||
RBAM_036360__    151 GTGATGGGGACAAATATCAGCGGCGGGCAATTTCAGATCATTGTCGGCAA    200

BSNT_06027___    201 CGATGTGCCGAAGGTGTATCAGGCGATTGTGCGGCAGAGCA---ATCTCA    247
                     .|||||||||||||||||||||||   |.||..|.||||||   ..||||
RBAM_036360__    201 TGATGTGCCGAAGGTGTATCAGGC---TTTGATGGAGAGCAGCGGGCTCA    247

BSNT_06027___    248 GTGATGAAAAGAGCGCTGGTTCATCCTC---TCAGAAAAAGAATGTGCTG    294
                     ||.|||||   |||||......|.|.||   .|||||.||.|||||||||
RBAM_036360__    248 GTCATGAA---AGCGCAAACAAAACTTCGAAGCAGAAGAAAAATGTGCTG    294

BSNT_06027___    295 AGTGCGGTCTTTGATGTGATTTCTGGGGTGTTTACTCCGATTCTGCCTGC    344
                     |||||.||.|||||.||||||||.||.||||||||.|||||||||||.||
RBAM_036360__    295 AGTGCCGTATTTGACGTGATTTCCGGTGTGTTTACACCGATTCTGCCGGC    344

BSNT_06027___    345 GATTGCGGGGGCGGGGATGATCAAAGGGCTTGTTGCGCTGGCAGTTACGT    394
                     .|||||.||.||.||.|||||.|||||||||||.|||||.||.||.||.|
RBAM_036360__    345 CATTGCAGGAGCCGGCATGATAAAAGGGCTTGTCGCGCTAGCGGTGACAT    394

BSNT_06027___    395 TTGGCTGGATGGCGGAGAAGAGCCAGGTTCATGTCATTTTGACGGCTGTC    444
                     |.||||||.||..|||||||||||||..|||...||||.|.|||||||||
RBAM_036360__    395 TCGGCTGGTTGTTGGAGAAGAGCCAGACTCACAGCATTCTCACGGCTGTC    444

BSNT_06027___    445 GGTGACGGTGCGTTCTACTTCCTGCCGCTCCTGCTAGCGATGAGTGCGGC    494
                     ||||||||||||||.||.||.||||||||..||||.|||.|.||.|||||
RBAM_036360__    445 GGTGACGGTGCGTTTTATTTTCTGCCGCTTTTGCTTGCGGTAAGCGCGGC    494

BSNT_06027___    495 GAGAAAATTCGGAAGCAATCCGTACGTAGCGGCAGCCATTGCGGCGGCGA    544
                     ||||||||||.||.|.|||||||||||.|||||.||..|.||||..||||
RBAM_036360__    495 GAGAAAATTCAGATGTAATCCGTACGTGGCGGCCGCTGTGGCGGGTGCGA    544

BSNT_06027___    545 TCCTGCATCCGGATTTGACAGCCCTGCTCGGTGCGGGGAAACCGATTTCC    594
                     |.||||||||||||||.||.||||||||.||.||.||||||...||.|||
RBAM_036360__    545 TTCTGCATCCGGATTTAACGGCCCTGCTTGGAGCAGGGAAAAGCATCTCC    594

BSNT_06027___    595 TTTATCGGGCTTCCTGTAACCGCTGCCACTTATTCGTCAACGGTCATCCC    644
                     ||||||||.||||||||||||||||||||.|||||.||.||.||||||||
RBAM_036360__    595 TTTATCGGTCTTCCTGTAACCGCTGCCACGTATTCATCGACAGTCATCCC    644

BSNT_06027___    645 GATTTTGCTGGCGATATGGAT--TGCTTCATACGTGGAAAAATGGATTGA    692
                     |||||||||||||||||||.|  ||  ||.||.||.||.|||.|.|||||
RBAM_036360__    645 GATTTTGCTGGCGATATGGCTGATG--TCCTATGTAGAGAAAGGAATTGA    692

BSNT_06027___    693 CCGTTTTACACACG----CATCTCTCAAATTGATTGTGGTTCCGACATTC    738
                     |||    |..||||    |||||.|.||||||||||..|||||||...|.
RBAM_036360__    693 CCG----AATCACGCCTTCATCTTTGAAATTGATTGCCGTTCCGATGCTT    738

BSNT_06027___    739 ACGCTATTGATTGTCGTGCCGCTGACATTGATTACAGTCGGTCCGCTTGG    788
                     |||||..||||.||||||||..|.||.|||||.||||||||.|||||.||
RBAM_036360__    739 ACGCTTGTGATCGTCGTGCCTGTCACCTTGATCACAGTCGGCCCGCTCGG    788

BSNT_06027___    789 CGCTATTTTAGGAGAA-TACTTGTCT-TCTGGGGTCAATTATTTGTTTGA    836
                     |||.|||.|.|| ||| |||.||||| || ||.||||||.|||||||..|
RBAM_036360__    789 CGCGATTCTCGG-GAATTACCTGTCTGTC-GGCGTCAATGATTTGTTCAA    836

BSNT_06027___    837 TCATGCAGGGCTTGTGGCGATGATTTTGCTGGCGGGTACATTCTCTTTAA    886
                     ||||||.||..|||..|||||||||.|.||.||.||.|||||.||..|.|
RBAM_036360__    837 TCATGCGGGTATTGCCGCGATGATTCTTCTTGCCGGCACATTTTCCCTCA    886

BSNT_06027___    887 TCATTATGACGGGCATGCACTATGCCTTTGTGCCGATTATGATCAACAAC    936
                     |||||||||||||.|||||.|||||..||||||||||.||||||||.|||
RBAM_036360__    887 TCATTATGACGGGGATGCATTATGCGCTTGTGCCGATCATGATCAATAAC    936

BSNT_06027___    937 ATCGCTCAAAACGGCCACGATTATTTACTGCCGGCTATGTTTTTGGCGAA    986
                     |||||.||||||||.||.||||||.|.|||||.||.||||||||||||||
RBAM_036360__    937 ATCGCCCAAAACGGACATGATTATATTCTGCCTGCGATGTTTTTGGCGAA    986

BSNT_06027___    987 TATGGGGCAGGCGGGAGCATCATTTGCAGTCTTCCTTCGCTCCAGAAACA   1036
                     ||||||||||||.||.||.||||||||.||.|||.|....||||.|||||
RBAM_036360__    987 TATGGGGCAGGCCGGCGCGTCATTTGCGGTTTTCTTAAAATCCAAAAACA   1036

BSNT_06027___   1037 AAAAATTTAAATCACTCGCGCTTACCACAAGCATCACGGCGCTGATGGGG   1086
                     |||..||.|||||.||.|||.||||.||..||||.|||||..|||||||.
RBAM_036360__   1037 AAACCTTCAAATCGCTGGCGTTTACGACGGGCATTACGGCATTGATGGGC   1086

BSNT_06027___   1087 ATCACAGAACCTGCAATGTACGGCGTGAATATGCGATTGAAAAAGCCGTT   1136
                     ||.||.|||||.||.|||||||||||.||.|||.||||||||||.|||||
RBAM_036360__   1087 ATTACCGAACCCGCGATGTACGGCGTTAACATGAGATTGAAAAAACCGTT   1136

BSNT_06027___   1137 TGCGGCCGCTTTGATTGGCGGTGCAGCCGGTGGCGCGTTTTACGGCATGA   1186
                     .|||||.||.||.||.|||||.||.||.||.||.||.||||||||..|.|
RBAM_036360__   1137 CGCGGCAGCATTAATCGGCGGCGCGGCAGGCGGAGCTTTTTACGGTGTAA   1186

BSNT_06027___   1187 CGGGTGTTGCTTCCTATATCGTCGGGGGGAATGCAGGTCTCCCGAGCATC   1236
                     ||||.||.|||||.||.||.|||||.||.||.||.|||||.||||||||.
RBAM_036360__   1187 CGGGCGTCGCTTCTTACATTGTCGGCGGAAACGCCGGTCTGCCGAGCATT   1236

BSNT_06027___   1237 CCTGTCTTTATCGGCCCAACGTTTATTTACGCGATGATCGGCCTTGTGAT   1286
                     ||.|||||||||||.||.||.|||.||||||||.|||||||.|||.|..|
RBAM_036360__   1237 CCGGTCTTTATCGGGCCGACATTTCTTTACGCGCTGATCGGGCTTTTTGT   1286

BSNT_06027___   1287 TGCGTTTGCGGCGGGAA------CAGCAGCTGCGTATTTGCTTGGATTCG   1330
                     ..|.||||||||.||.|      |.||| ||||     ||.|.||.||.|
RBAM_036360__   1287 CTCATTTGCGGCCGGTATTGCGGCGGCA-CTGC-----TGATCGGGTTTG   1330

BSNT_06027___   1331 AGGATGTGCCTTCTG-ACGGCA------GCCAGCAGCCGGCAGTGCATGA   1373
                     |||||||.|..||.| ||||.|      |.|.|.|| ||.||| |..|||
RBAM_036360__   1331 AGGATGTACAGTCCGAACGGGACAAAGCGTCTGAAG-CGCCAG-GGGTGA   1378

BSNT_06027___   1374 GGGCA-GCAGAGAGATCATTCACAGCCCGATTAAGGGAGAAGTGAAAGCC   1422
                     .|||| ||.||||.||||||||||||||||||||.||.|||||||||||.
RBAM_036360__   1379 CGGCAGGCGGAGAAATCATTCACAGCCCGATTAAAGGCGAAGTGAAAGCA   1428

BSNT_06027___   1423 TTAAGTGAAGTCAAAGATGGAGTATTTTCTGTCGGGATCATGGGAAAAGG   1472
                     |||||.|||||.||.||..|.||.|||||.|..||.||.|||||||||||
RBAM_036360__   1429 TTAAGCGAAGTGAACGACAGCGTCTTTTCCGGTGGAATGATGGGAAAAGG   1478

BSNT_06027___   1473 ATTTGCCATTGAGCCTGAAGAAGGAGAAGTTGTGTCGCCTGTTCGT----   1518
                     .|||||.|||..|||||||||.||.|.||..||.||.||    |||    
RBAM_036360__   1479 TTTTGCGATTCTGCCTGAAGAGGGCGCAGCGGTTTCTCC----CGTAGAA   1524

BSNT_06027___   1519 GGAAGCGTTACCACCATTTTTAAAACAAAACACGCAATTGGCATTACGAG   1568
                     ||.||.||.||..||.|.|||||||||||.|||||.||.|||||||||||
RBAM_036360__   1525 GGGAGGGTGACAGCCGTATTTAAAACAAAGCACGCCATCGGCATTACGAG   1574

BSNT_06027___   1569 TGATCA----GGGAGCTGAAATACTCATACACATTGGATTGGACACGGTA   1614
                         ||    ||||||.||..|.|||||.||.||.||..|.||.||.||.
RBAM_036360__   1575 ----CACCCGGGGAGCCGAGGTTCTCATTCATATCGGGCTTGATACCGTC   1620

BSNT_06027___   1615 AAGCTGGAGGGACAATGG----TTCACGGTTCACGTCAAAGAAGGCGACA   1660
                     ..||||||.|| ||  ||    ||.| |.|.||.||||||||||||||.|
RBAM_036360__   1621 CGGCTGGATGG-CA--GGCATTTTGA-GATGCATGTCAAAGAAGGCGATA   1666

BSNT_06027___   1661 AGGTCGCACCGGGAGATCCGCTCGTGTCCTTTGATCTGGAGCAAATCAAA   1710
                     ..|||||.||||||||||.|||..|..|.||||||.|.||..|.|| |||
RBAM_036360__   1667 CTGTCGCGCCGGGAGATCTGCTGATTACTTTTGATATCGACGAGAT-AAA   1715

BSNT_06027___   1711 GAC-GCGGGATATGACGTCATTACTCCGGTGATCGTGACCAACACAGACC   1759
                     |.| ||.||.|.||||||.||.||.|||||.|||.|.||.||.||.||.|
RBAM_036360__   1716 GGCTGCCGGTTTTGACGTGATCACGCCGGTCATCATTACGAATACGGATC   1765

BSNT_06027___   1760 AATATTCATTTTC-GCCGGTGAAAGAGATCGGTAAAGTGCAGA-CAAAAG   1807
                     |||||||||||.| |.| ||||||.|.|.||| ||.|..||.| |.||.|
RBAM_036360__   1766 AATATTCATTTACAGAC-GTGAAAAAAAGCGG-AATGGTCAAACCGAACG   1813

BSNT_06027___   1808 AAGCGCTGCTTGCTTTATCTTGA   1830
                     |||||||.||.||.|||||.|||
RBAM_036360__   1814 AAGCGCTTCTGGCGTTATCCTGA   1836


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