Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06039 and RBAM_036420
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:31
# Commandline: needle
# -asequence dna-align/BSNT_06039.1.9828.seq
# -bsequence dna-align/RBAM_036420___hutU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06039-RBAM_036420___hutU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06039-RBAM_036420___hutU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06039
# 2: RBAM_036420___hutU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1722
# Identity: 1113/1722 (64.6%)
# Similarity: 1113/1722 (64.6%)
# Gaps: 330/1722 (19.2%)
# Score: 4221.5
#
#
#=======================================
BSNT_06039 0 -------------------------------------------------- 0
RBAM_036420__ 1 ATGACTGATGTAAAGAAATCAATCCGCGCCGGCCGCGGCACCGAACTTGA 50
BSNT_06039 0 -------------------------------------------------- 0
RBAM_036420__ 51 ATGCTTAGGATGGGAGCAGGAAGCCGTGCTCCGCATGCTCCGAAACAACC 100
BSNT_06039 0 -------------------------------------------------- 0
RBAM_036420__ 101 TTGACCCGGAGGTTGCCGAAAAGCCGGAGGATCTGATCGTATACGGCGGC 150
BSNT_06039 0 -------------------------------------------------- 0
RBAM_036420__ 151 ATAGGCAAGGCCGCACGAAACTGGGATGCTTTTCACGCGATTGAGCGTTC 200
BSNT_06039 1 -----------------ATGATAAGA----GCTG---CAA----GAAACC 22
|||||.|.| |||| ||| ||||.|
RBAM_036420__ 201 CCTCAAAATGTTAAAAGATGATGAAACACTGCTGATCCAATCCGGAAAAC 250
BSNT_06039 23 CG--------------------CAG----GCCCCGCGCGTGCTCCTAGCA 48
|| ||| ||.||.|||||.||.||.||.
RBAM_036420__ 251 CGGTCGGATTGTTCCGCACGCACAGCCGCGCGCCCCGCGTCCTGCTGGCC 300
BSNT_06039 49 AATTCTGTTCTTGTTCCGAAGTGGGCAGACTGGGAGCATTTCCACGAACT 98
|||||.|||||.||.|||||.|||||.||.||||||||||||||.||.||
RBAM_036420__ 301 AATTCGGTTCTCGTGCCGAAATGGGCGGATTGGGAGCATTTCCATGACCT 350
BSNT_06039 99 TGAGAAAAAAGGGTTAATGATGTACGGACAGATGACGGCTGGCAGCTGGA 148
|||||||||||||.|.|||||||||||.|||||||||||.||||||||||
RBAM_036420__ 351 TGAGAAAAAAGGGCTGATGATGTACGGGCAGATGACGGCCGGCAGCTGGA 400
BSNT_06039 149 TTTACATTGGCTCACAAGGCATATTGCAAGGAACCTATGAAACCTTCGCT 198
||||.||.|||||||||||.||.||||||||.||||||||||||||.||.
RBAM_036420__ 401 TTTATATCGGCTCACAAGGTATTTTGCAAGGCACCTATGAAACCTTTGCG 450
BSNT_06039 199 GAGCTGGCGCGACAGCACTTTGGGGGCAGCTTAAAAGGAACGTTGACGCT 248
|||||.|||.|||||||.||.||.|||||..|.||||||||..|.|||||
RBAM_036420__ 451 GAGCTTGCGAGACAGCATTTCGGCGGCAGTCTGAAAGGAACCCTTACGCT 500
BSNT_06039 249 GACAGCGGGTCTCGGCGGAATGGGAGGCGCACAGCCGCTGTCTGTCAGTA 298
|||.||.||.||.|||||||||||||||||.|||||||||||.||||..|
RBAM_036420__ 501 GACGGCCGGACTTGGCGGAATGGGAGGCGCCCAGCCGCTGTCCGTCACGA 550
BSNT_06039 299 TGAATGAAGGCGTCGTTATTGCCGTCGAGGTTGACGAGAAACGCATCGAC 348
|||||||.||||||||.||.|||||.||.|..||.||.|.|||.||.||.
RBAM_036420__ 551 TGAATGATGGCGTCGTCATCGCCGTTGAAGCGGATGAAACACGGATTGAT 600
BSNT_06039 349 AAGCGGATCGAAACAAAATACTGCGATCGAAAAACAGCATCGATTGAGGA 398
||.||.||.||||||||.||.|||||.||.|||||.|||||.|||||.||
RBAM_036420__ 601 AAACGCATTGAAACAAACTATTGCGACCGTAAAACCGCATCAATTGACGA 650
BSNT_06039 399 AGCCTTAGCT----TGGGCTGAAG-----AGGCAAAGCTGGCAGGAAAAC 439
||| ||| |||||.|||| ||.||| ||.|||.|.|
RBAM_036420__ 651 AGC----GCTGCGCTGGGCCGAAGCAGCCAGACAA-----GCCGGAGAGC 691
BSNT_06039 440 CTTTGTCCATTGCGCTTCTCGGAAACGCGGCTGAGGTGCATCACACACTT 489
||||.||.||.|..||||||||.||.|||||||||||||||||....|||
RBAM_036420__ 692 CTTTATCGATCGGCCTTCTCGGTAATGCGGCTGAGGTGCATCATGAGCTT 741
BSNT_06039 490 TTGAACCGAGGCGTCAACATTGATATTGTGACAGATCAGACATCTGCCCA 539
||||||||.||||||.|.|||||.||.|||||.||||||||.||.||.||
RBAM_036420__ 742 TTGAACCGCGGCGTCCATATTGACATCGTGACCGATCAGACTTCCGCTCA 791
BSNT_06039 540 TGACCCTTTAATCGGTTATGTTCCCGAAGGCTACTCCCTTGATGAAGCTG 589
.|||||..|.|||||.|||.||||.|.|||.|||||.|||||.||.||.|
RBAM_036420__ 792 CGACCCGCTGATCGGCTATATTCCGGCAGGATACTCACTTGAAGAGGCCG 841
BSNT_06039 590 ACCGTTTGCGTCAAGACAATCCAGAGCTTTACGTGCGCCTTGCGAAGCAA 639
||||..||||.|..||..|.||.||..|.|||||..|.|||.|.|||||.
RBAM_036420__ 842 ACCGCCTGCGCCGGGATCAGCCTGAATTATACGTAAGGCTTTCCAAGCAG 891
BSNT_06039 640 AGCATGAAAAAACATGTCGAAGCCATGCTGGCCTTTCAGCAAAAGGGCTC 689
||.||||||||.|||||.|||||||||||.|||||..||.||||.||..|
RBAM_036420__ 892 AGTATGAAAAAGCATGTGGAAGCCATGCTCGCCTTCAAGAAAAAAGGTGC 941
BSNT_06039 690 TATTGTATTTGACTACGGCAACAATATCCGGCAAGTCGCAAAGGATGAAG 739
..|.||.|||||.|||||||||||||||||.||.|..||.||.|||||.|
RBAM_036420__ 942 CGTCGTCTTTGATTACGGCAACAATATCCGCCAGGCTGCCAAAGATGAGG 991
BSNT_06039 740 GGCTGGAGAATGCCTTCGATTTTCCGGGTTTTGTCCCTGCCTACATCCGC 789
|.||.|...||||.||.|||||||||||.||.||.||.|||||||||||.
RBAM_036420__ 992 GTCTCGCCGATGCTTTTGATTTTCCGGGATTCGTTCCCGCCTACATCCGG 1041
BSNT_06039 790 CCCTTATTCTGTGAAGGAAAAGGGCCGTTCCGTTGGGCGGCGCTTTCCGG 839
||.|||||.|||||||||||||||||||||||.|||||.|||||.||.||
RBAM_036420__ 1042 CCTTTATTTTGTGAAGGAAAAGGGCCGTTCCGCTGGGCCGCGCTGTCGGG 1091
BSNT_06039 840 AGATCCGGCAGATATTTACCGTACGGATGCGTTATTAAAAGAGCTGTTCC 889
.||.||.|.||||||.|||||.|||||.||.|||||||||||||||||.|
RBAM_036420__ 1092 TGACCCTGAAGATATATACCGCACGGACGCTTTATTAAAAGAGCTGTTTC 1141
BSNT_06039 890 CAACAAATAAAGCCCTTCACCGCTGGATTGATATGGTACAGGAAAAAGTC 939
||..||||.||||||||||||||||||||||.||||.||||.||||||||
RBAM_036420__ 1142 CAGAAAATCAAGCCCTTCACCGCTGGATTGACATGGCACAGAAAAAAGTC 1191
BSNT_06039 940 ACCTTCCAAGGCTTGCCGTCCCGTATTTGCTGGCTTGGATATGGAGAACG 989
||.|||||||||.||||||||||||||||||||||.||.||.||.|||||
RBAM_036420__ 1192 ACATTCCAAGGCCTGCCGTCCCGTATTTGCTGGCTCGGCTACGGTGAACG 1241
BSNT_06039 990 AAAAAAGATGGGCCTCGCCATTAACGAGCTGGTTAGAAGCGGGGAGCTAA 1039
..||||||||||.||||||||.||.||..||||.||||.|||.|||||.|
RBAM_036420__ 1242 GGAAAAGATGGGGCTCGCCATCAATGAATTGGTCAGAAACGGCGAGCTGA 1291
BSNT_06039 1040 AAGCGCCTGTCGTTATTGGGAGAGATCATTTGGACTGCGGGTCTGTCGCC 1089
||||.||..||||.||.||.|||||.|||||.||||||||.|||||||||
RBAM_036420__ 1292 AAGCCCCGATCGTCATCGGAAGAGACCATTTAGACTGCGGATCTGTCGCC 1341
BSNT_06039 1090 TCTCTAAACCGGGAGACAGAAGCGATGAAGGACGGAAGTGACGCTGTTGG 1139
||.|..||.|||||.||||||||||||||.|||||.||.|||||.||.||
RBAM_036420__ 1342 TCCCCGAATCGGGAAACAGAAGCGATGAAAGACGGCAGCGACGCGGTCGG 1391
BSNT_06039 1140 TGACTGGGATGTGCTAAATGCGCTTGTCAACACGGCGGCGGGTGCAAGCT 1189
.||.||||..|||||.||.|||||..||||||||||..|.||.|||||||
RBAM_036420__ 1392 CGATTGGGCGGTGCTGAACGCGCTGATCAACACGGCCTCAGGCGCAAGCT 1441
BSNT_06039 1190 GGGTTTCCTTCCACCATGGCGGCGGTGTCGGAATGGGCTATTCCCTGCAT 1239
|||||||.||.|||||.|||||.||.|||||.|||||.||||||||.||.
RBAM_036420__ 1442 GGGTTTCTTTTCACCACGGCGGGGGCGTCGGCATGGGGTATTCCCTTCAC 1491
BSNT_06039 1240 GCCGGCATGGTTGCAGTGGCCGATGGAAGTGAGCTGGCTGACGAGCGGCT 1289
||.||.|||||.||.||.||.||.||.||....||.||.||..|||||||
RBAM_036420__ 1492 GCGGGAATGGTCGCGGTCGCTGACGGCAGCATCCTTGCGGAACAGCGGCT 1541
BSNT_06039 1290 CGCGCGGGTCTTAACGAGCGACCCGGGAATGGGCATTATCCGTCATGCGG 1339
..|.||.||..|.||.|||||.||||||||||||||.|||||.|||||||
RBAM_036420__ 1542 TTCCCGCGTTCTGACAAGCGATCCGGGAATGGGCATCATCCGCCATGCGG 1591
BSNT_06039 1340 ATGCGGGTTATGAACGTGCCGTT---GT--GCGATTTTTGCAGCCCTTCT 1384
|.||.|||||||||...||.|.| || .|||
RBAM_036420__ 1592 ACGCAGGTTATGAAAAAGCGGCTCAAGTCGCCGA---------------- 1625
BSNT_06039 1385 TTTTATATGCAACGCATTTTCAGTTAAG---TTATTTGCAGAAAC---TG 1428
|.||| ||| |||| ||.|| ||
RBAM_036420__ 1626 --------GGAAC------------AAGACATTAT-----GATACCGATG 1650
BSNT_06039 1429 AATTTTGGTTTTCCAGC-GTAA 1449
||....| ||| ||||
RBAM_036420__ 1651 AAAAAGG-------AGCGGTAA 1665
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