Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06041 and RBAM_036450

See Amino acid alignment / Visit BSNT_06041 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:32
# Commandline: needle
#    -asequence dna-align/BSNT_06041.1.9828.seq
#    -bsequence dna-align/RBAM_036450___hutM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06041-RBAM_036450___hutM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06041-RBAM_036450___hutM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06041
# 2: RBAM_036450___hutM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1452
# Identity:     680/1452 (46.8%)
# Similarity:   680/1452 (46.8%)
# Gaps:         582/1452 (40.1%)
# Score: 2464.5
# 
#
#=======================================

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__      1 ATGGATGTTGATCAAGGCGGCAATCAACTAAAGCGCACGATGAAAAGCAG     50

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__     51 GCACTTATTTATGATTTCATTGGGAGGAGTCATCGGCACGGGGCTGTTTT    100

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    101 TGAGCACAGGGTATACATTGAGCCAGGCCGGGCCGGGCGGGACGATCGCC    150

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    151 GCTTACCTGATCGGCGGCTTGATGATGTATCTTGTCATGCAGTGTCTCGG    200

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    201 AGAATTGTCAGTAGCCATGCCTGTGACCGGTTCATTTCAAACGTATGCGA    250

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    251 CAACGTTTATCGGGCCGTCCACGGGTTTTATGGTCGGTATCATGTATTGG    300

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    301 GTGAATTGGGTGGTGACGGTAGGATCGGAGTTTACAGCTTCCGGTATCCT    350

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    351 CATGCAGCGCTGGTTTCCCCACAGCAGCGTCTGGATGTGGAGCGCGATTT    400

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    401 TCGCGGCTCTCCTTTTTGCCGCCAATGCATTCTCCGTTAAATTGTTTGCA    450

BSNT_06041         0 --------------------------------------------------      0
                                                                       
RBAM_036450__    451 GAAACAGAGTTTTGGTTTTCCAGCGTCAAAATCGTTACCATCCTTTTATT    500

BSNT_06041         1 ----------------------ATGTTTGGCCTGATCTCTTTAAACGGAA     28
                                           |||||.||..||||.||.||..||||..
RBAM_036450__    501 TATCATCTTAGGCGGCGCCGCGATGTTCGGTTTGATTTCATTGCACGGTT    550

BSNT_06041        29 CGGCGGATGCTCCTATGCTGTCAAACTTCACGGACCACGGCGGGCTGTTT     78
                     |||..||.|||||.||||||||.||.|||||....||||||||.||||||
RBAM_036450__    551 CGGGTGAAGCTCCGATGCTGTCGAATTTCACCTCGCACGGCGGACTGTTT    600

BSNT_06041        79 CCGAATGGCTTTCTCGCCGTTTTTATCGCGATGATATCTGTGAGTTTCGC    128
                     |||||.||||||||.||.|||||.||.||.|||||.||.||.||.||.||
RBAM_036450__    601 CCGAACGGCTTTCTTGCGGTTTTCATTGCAATGATTTCCGTAAGCTTTGC    650

BSNT_06041       129 CTTTTCTGGTACAGAGTTAATCGGCGTTACAGCAGGAGAATCAGCAAATC    178
                     ||||||.||.||.|||.|.|||||..|||||||.||.|||.|.||.||||
RBAM_036450__    651 CTTTTCAGGGACGGAGCTGATCGGAATTACAGCGGGTGAAACCGCCAATC    700

BSNT_06041       179 C-TCAAAAGGATATACCGCGATCCATCCGTAATGTCGCATGGAGAACCGT    227
                     | .||||| |||||.|||||.||.|||||.||||||||.||||||||.||
RBAM_036450__    701 CGGCAAAA-GATATTCCGCGTTCGATCCGGAATGTCGCCTGGAGAACGGT    749

BSNT_06041       228 TATTTTTTTCATTGGCGCTGTCTTCATATTATCCGGGTTGATTTCGTGGA    277
                     |||.|||||.||.|||||..|.||..|..|.|||||..||||.||.||||
RBAM_036450__    750 TATCTTTTTTATCGGCGCCATTTTTGTGCTGTCCGGACTGATCTCCTGGA    799

BSNT_06041       278 AGGACGCAGGCGTGATTGAAAGCCCGTTTGTAGCCGTATTTGCGGAGATC    327
                     ||||.||.||.|||||||||||.||||||||.||.||.|||.|..|.|||
RBAM_036450__    800 AGGAAGCCGGTGTGATTGAAAGTCCGTTTGTCGCGGTCTTTTCCCAAATC    849

BSNT_06041       328 GGAATCCCTTACGCTGCTGATATTATGAATTTCGTGATATTAACAGCCTT    377
                     ||.|||||.|||||.||.|||||.||||||||||||||.|||||.||.||
RBAM_036450__    850 GGTATCCCATACGCCGCCGATATCATGAATTTCGTGATTTTAACGGCTTT    899

BSNT_06041       378 GCTGTCTGTCGCCAACTCAGGCTTATATGCTTCGACCCGTATGATGTGGT    427
                     |||.||.|||||||||||.||..|.||||||||.|||||.|||.||||||
RBAM_036450__    900 GCTTTCGGTCGCCAACTCCGGACTGTATGCTTCCACCCGGATGCTGTGGT    949

BSNT_06041       428 CGTTAGCAAATGAAAACATGATCAGTTCCCGTTTTAAGAAAGTGACCTCT    477
                     |..|.||.|||||||||||||||||..||||.||.||.|||||.||..|.
RBAM_036450__    950 CTCTTGCGAATGAAAACATGATCAGCGCCCGGTTCAAAAAAGTCACGCCG    999

BSNT_06041       478 AAAGGCATTCCTTTAAATGC-CTTAATGAT---CAGTATGGCTGTATCTT    523
                     |||||||||||..|.||||| |    ||.|   |||.|||||.||.||.|
RBAM_036450__   1000 AAAGGCATTCCGCTGAATGCTC----TGCTCGCCAGCATGGCCGTTTCCT   1045

BSNT_06041       524 GTTTATCTCTCG-TTTCCAGTATCGTGGCCCCTGGAACTGTCTATGTGGT    572
                     |..|||| ||.| |.||.||.||||..|||||.||.||.|||||.|||||
RBAM_036450__   1046 GCATATC-CTTGATCTCAAGCATCGCCGCCCCGGGCACGGTCTACGTGGT   1094

BSNT_06041       573 GATGGTCGCAATTGCTGGATTTGCAGGAGTCGTGGTCTGGATGAGCATTG    622
                     |.|.||.|||||.||.||||||||.||.||||||||.|||||||||||.|
RBAM_036450__   1095 GCTTGTGGCAATAGCCGGATTTGCCGGCGTCGTGGTGTGGATGAGCATCG   1144

BSNT_06041       623 CCTTGTCCCAGCTCTTGTTTCGAAAGAGATT-TCTGAAAAAAGGGGGGAA    671
                     ||.||||.|||||.||.|||||||| |.||| |.|||||||.||.||...
RBAM_036450__   1145 CCCTGTCTCAGCTGTTATTTCGAAA-ACATTATGTGAAAAACGGCGGACG   1193

BSNT_06041       672 TGTAAAAGATCTGACATTTCGCACGCCGCTTTATCCTCTTATGCCTATAG    721
                     .||....||||||||.||.|||||.|||.|.||.|||||..|.||.||.|
RBAM_036450__   1194 CGTCTCGGATCTGACCTTCCGCACACCGTTATACCCTCTCGTTCCGATCG   1243

BSNT_06041       722 CCGCTCTCTTATTATGTTCTGCTTCTTGTATCGGTCTTGCTTTTGATCCC    771
                     |||||.|..|.|||||||..|||||.||..|.||.|||||.|||||||||
RBAM_036450__   1244 CCGCTGTGATCTTATGTTTCGCTTCATGCGTAGGCCTTGCATTTGATCCC   1293

BSNT_06041       772 AATCAAAGAATCGCACTTTTCTGCGGAGTTCCTTGTATCATCCTTTGCTA    821
                     ||||||||||||||.||.|||||||||.||||||||||.|||||.|||||
RBAM_036450__   1294 AATCAAAGAATCGCCCTCTTCTGCGGAATTCCTTGTATGATCCTGTGCTA   1343

BSNT_06041       822 TCTCATCTACCATTTCAAAAGAAATGTTACAAAAGCGAAAAAAATCAGCC    871
                     ||||||   .|.|||....|||||            ||||     |||||
RBAM_036450__   1344 TCTCAT---TCGTTTTTTGAGAAA------------GAAA-----CAGCC   1373

BSNT_06041       872 AAGAGGAA--TATCCGGCCGATCACATCC-----TATAA-----------    903
                          |||  .|||||.||| |.||||.|     .||||           
RBAM_036450__   1374 -----GAAACAATCCGTCCG-TGACATTCATTTGGATAAAACCATGCCAT   1417

BSNT_06041       903 --    903
                       
RBAM_036450__   1418 AA   1419


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