Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06079 and RBAM_036610

See Amino acid alignment / Visit BSNT_06079 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:34
# Commandline: needle
#    -asequence dna-align/BSNT_06079.1.9828.seq
#    -bsequence dna-align/RBAM_036610___yxdL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06079-RBAM_036610___yxdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06079-RBAM_036610___yxdL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06079
# 2: RBAM_036610___yxdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     402/774 (51.9%)
# Similarity:   402/774 (51.9%)
# Gaps:         357/774 (46.1%)
# Score: 1950.0
# 
#
#=======================================

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__      1 ATGGCGAATATGCTTGAAGTCAAACATATAAATAAAACCTATAAAGGACA     50

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__     51 AGTGTCCTATCAAGCTTTAAAACAAATTTCGTTTTCAATAGAAGAAGGCG    100

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__    101 GGTTCACGGCGGTGATGGGACCGTCCGGCTCCGGAAAAACAACGCTTTTG    150

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__    151 AATATCATTTCAACGATCGACCGGCCGGATTCAGGCGATATCCTGATTCA    200

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__    201 CGGAGAAAACCCGCACCGGCTGAAGCGGACAAAGCTCGCTCATTTCCGCC    250

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__    251 GCAAGCAGCTCGGATTTGTGTTTCAGGATTTCAACCTTCTGGACACGCTG    300

BSNT_06079         0 --------------------------------------------------      0
                                                                       
RBAM_036610__    301 ACGATCGGTGAAAATATCATGCTGCCGTTAACGCTTGAAAAAGAAGCGCC    350

BSNT_06079         1 -------ATGGAAGAAAAACTGCAAGGCATCGCGGCAAAGCTCGGAATCG     43
                            |||||||||||||||||.|||||||||||||||||||||||||
RBAM_036610__    351 GTCTGTCATGGAAGAAAAACTGCACGGCATCGCGGCAAAGCTCGGAATCG    400

BSNT_06079        44 AAAACCTGCTCAACAAACGGACGTTTGAAGTATCCGGAGGACAGCGCCAG     93
                     ||.||||||||||||||||||||||||||||||||||.||||||||||||
RBAM_036610__    401 AAGACCTGCTCAACAAACGGACGTTTGAAGTATCCGGCGGACAGCGCCAG    450

BSNT_06079        94 CGTGCCGCCATCGCAAGAGCGGTCATTCATAAGCCGTCACTCATCCTGGC    143
                     ||.|||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_036610__    451 CGGGCCGCCATCGCAAGAGCGGTCATTCATAAGCCGTCACTCATTCTGGC    500

BSNT_06079       144 CGATGAACCGACGGGCAACCTTGATTCCAAAGCGTCAAAAGACGTCATGG    193
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_036610__    501 CGATGAACCGACGGGAAACCTTGATTCCAAAGCGTCAAAAGACGTCATGG    550

BSNT_06079       194 AAACGATGCAGAGCCTGAATCAGGATGATCATGTCACGGCTTTGATGGAT    243
                     |||||||||||||||||||.||||||||||||.|||||||||||||||..
RBAM_036610__    551 AAACGATGCAGAGCCTGAACCAGGATGATCATATCACGGCTTTGATGGTG    600

BSNT_06079       244 ACCCACGATCCTGTTGCGGCAAGCTACTGCCGCCGCGTCATCTTTATAAA    293
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_036610__    601 ACCCACGATCCGGTTGCGGCAAGCTACTGCCGCCGCGTCATCTTTATAAA    650

BSNT_06079       294 AGACGGCGAACTATTTAATGAGATTTACCGCGGGGAAAACCGCCAAGTCT    343
                     ||||||||||||.|||||||||||||||||||||||||||||||||||||
RBAM_036610__    651 AGACGGCGAACTGTTTAATGAGATTTACCGCGGGGAAAACCGCCAAGTCT    700

BSNT_06079       344 TTTATGAACAAATTCTCGATGTGCTGTCTATGCTGGGGGGAAACGCAAAT    393
                     |||||||.||.|||||.|||||||||||||||||||||||||||||||||
RBAM_036610__    701 TTTATGAGCAGATTCTTGATGTGCTGTCTATGCTGGGGGGAAACGCAAAT    750

BSNT_06079       394 GACCTTTCTTCAGTTCGCTTATAA    417
                     ||||||||||||||||||||||||
RBAM_036610__    751 GACCTTTCTTCAGTTCGCTTATAA    774


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