Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06097 and RBAM_036750

See Amino acid alignment / Visit BSNT_06097 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:35
# Commandline: needle
#    -asequence dna-align/BSNT_06097___iolD.1.9828.seq
#    -bsequence dna-align/RBAM_036750___iolD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06097___iolD-RBAM_036750___iolD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06097___iolD-RBAM_036750___iolD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06097___iolD
# 2: RBAM_036750___iolD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1920
# Identity:    1530/1920 (79.7%)
# Similarity:  1530/1920 (79.7%)
# Gaps:          12/1920 ( 0.6%)
# Score: 6094.0
# 
#
#=======================================

BSNT_06097___      1 GTGGGTAAGAAAATTCGCTTAACAACAGCACAGGCGCTGATTAAATTCTT     50
                     ||||||||||.||||||||||||.||||||||.|||||||||.|||||||
RBAM_036750__      1 GTGGGTAAGACAATTCGCTTAACGACAGCACAAGCGCTGATTCAATTCTT     50

BSNT_06097___     51 AAACCAGCAGTACATCCATGTTGATGGAAAGGAAGAGCCTTTTGTCGAAG    100
                     .||||.|||||||||.||||||||.|||||.||||||||.||.||.||.|
RBAM_036750__     51 GAACCGGCAGTACATTCATGTTGACGGAAAAGAAGAGCCGTTCGTTGAGG    100

BSNT_06097___    101 GGATTTTCACAATTTTCGGTCATGGAAACGTATTAGGGATCGGGCAAGCG    150
                     |.||.|||||.||||||||.||.|||||.||.||.|||||||||||.|||
RBAM_036750__    101 GCATCTTCACGATTTTCGGCCACGGAAATGTGTTGGGGATCGGGCAGGCG    150

BSNT_06097___    151 CTTGAGCAGGATGCAGGCCATTTGAAAGTCTATCAAGGGAAAAATGAACA    200
                     |||||||||||.||.||.||..||||||||||||||||.|||||.|||||
RBAM_036750__    151 CTTGAGCAGGACGCCGGGCACCTGAAAGTCTATCAAGGCAAAAACGAACA    200

BSNT_06097___    201 AGGAATGGCGCATGCGGCCATGGCGTACAGCAAGCAAATGCTGAGAAGAA    250
                     |||.|||||||||||.||.|||||.|||||||||||.|||||||||||||
RBAM_036750__    201 AGGCATGGCGCATGCCGCGATGGCATACAGCAAGCAGATGCTGAGAAGAA    250

BSNT_06097___    251 AAATATATGCGGTGTCTACATCCGTCGGACCTGGAGCGGCTAACTTGGTG    300
                     ||||.||.|||||.||.|||||.|||||.||.||.||.|||||||||..|
RBAM_036750__    251 AAATTTACGCGGTATCGACATCGGTCGGTCCGGGTGCCGCTAACTTGACG    300

BSNT_06097___    301 GCGGCAGCCGGCACTGCATTGGCAAACAATATCCCAGTTCTCTTGATTCC    350
                     ||.||.||.||.||.||..||||.||..|||||||.||.||..||.||||
RBAM_036750__    301 GCTGCCGCGGGTACGGCGCTGGCCAATCATATCCCGGTGCTGCTGCTTCC    350

BSNT_06097___    351 GGCAGACACATTTGCGACAAGACAGCCAGACCCTGTACTGCAGCAAATGG    400
                     |||.||.||.||||||||.||.|||||.|||||.||.||.|||||..|||
RBAM_036750__    351 GGCCGATACCTTTGCGACGAGGCAGCCTGACCCGGTGCTTCAGCAGGTGG    400

BSNT_06097___    401 AGCAAGAATACAGCGCGGCGATTACGACAAACGATGCATTGAAACCTGTA    450
                     ||||.||||||||.||.||..|.||.|||||||||||.||.||.||.||.
RBAM_036750__    401 AGCAGGAATACAGTGCCGCCGTCACAACAAACGATGCGTTAAAGCCCGTG    450

BSNT_06097___    451 TCGAGATACTGGGACCGCATTACGCGCCCTGAGCAGCTGATGAGCAGTTT    500
                     ||..|.||.|||||.|||||.||.|||||.|||||||||||||||||.||
RBAM_036750__    451 TCCCGCTATTGGGATCGCATCACCCGCCCCGAGCAGCTGATGAGCAGCTT    500

BSNT_06097___    501 GCTGCGCGCGTTTGAAGTCATGACTGATCCGGCAAAAGCAGGTCCGGCAA    550
                     ..|.||.|||||||||||.|||||.||||||||||||||.||.|||||.|
RBAM_036750__    501 AATCCGGGCGTTTGAAGTGATGACAGATCCGGCAAAAGCGGGCCCGGCGA    550

BSNT_06097___    551 CGATTTGTATTTCTCAGGATGTTGAAGGGGAAGCATACGATTTTGATGAA    600
                     |.||.||.||||||||||||||.||.||.|||||||..||||||||||||
RBAM_036750__    551 CCATCTGCATTTCTCAGGATGTAGAGGGAGAAGCATTTGATTTTGATGAA    600

BSNT_06097___    601 AGTTTCTTCGTCAAACGGGTTCACTATATTGATCGCATGCAGCCGAGCGA    650
                     ||.|||||.|..|||||.|||||.||.|||||.||.||||||||||||||
RBAM_036750__    601 AGCTTCTTTGAAAAACGCGTTCATTACATTGACCGGATGCAGCCGAGCGA    650

BSNT_06097___    651 GCGCGAGCTTCAAGGTGCGGCGGAGCTGATTAAATCCAGCAAAAAA----    696
                     |||.||.||..||||.||.|||||....||||     ||||.|..|    
RBAM_036750__    651 GCGTGAACTGAAAGGCGCCGCGGAAAGAATTA-----AGCAGAGCAGCCG    695

BSNT_06097___    697 -CCTGTGATTCTCGTCGGCGGAGGCGCAAAATATTCCGGTGCGCGCGATG    745
                      ||.||.|||.|.||.|||||.|||||.||.||.|||||.|||||.||.|
RBAM_036750__    696 TCCCGTCATTTTAGTGGGCGGCGGCGCGAAGTACTCCGGCGCGCGTGAGG    745

BSNT_06097___    746 AATTGGTTGCCATTTCTGAAGCCTATAACATTCCGTTAGTTGAAACACAG    795
                     ||||..|.||..||||||||.|.||...|||||||.|.||.|||||.|||
RBAM_036750__    746 AATTAATCGCGCTTTCTGAAACATACGGCATTCCGCTTGTCGAAACGCAG    795

BSNT_06097___    796 GCAGGAAAGTCTACTGTTGAGGCAGATTTTGCGAACAACCTTGGCGGAAT    845
                     ||.||.|||||.||.|||||.||.|||||.||.|||||.||.|||||.||
RBAM_036750__    796 GCCGGCAAGTCAACGGTTGAAGCCGATTTCGCCAACAATCTGGGCGGCAT    845

BSNT_06097___    846 GGGCATCACAGGTACACTTGCGGCAAACAAAGCGGCCCGCCAAGCTGATT    895
                     |||||||||.||.||.||.||.|||||||||||.||||||||.||||||.
RBAM_036750__    846 GGGCATCACGGGCACCCTCGCCGCAAACAAAGCCGCCCGCCAGGCTGATC    895

BSNT_06097___    896 TGATTATCGGCATCGGCACAAGGTATACAGATTTTGCGACATCCTCTAAG    945
                     ||||.|||||..||||||||.||||.||.||.||||||||||||||.||.
RBAM_036750__    896 TGATCATCGGTGTCGGCACACGGTACACGGACTTTGCGACATCCTCGAAA    945

BSNT_06097___    946 ACCGCTTTTGATTTTGATAAAGCGAAGTTTTTGAACATTAACGTCAGCCG    995
                     ||.||.|||||||||||.|||||.||.||||||||.||.|||||||||||
RBAM_036750__    946 ACGGCGTTTGATTTTGACAAAGCAAAATTTTTGAATATCAACGTCAGCCG    995

BSNT_06097___    996 AATGCAGGCGTATAAACTTGATGCATTCCAAGTGGTAGCGGATGCGAAAG   1045
                     .||||||||.||.||.|||||.||.||.||.||.|||||.||||||||||
RBAM_036750__    996 CATGCAGGCTTACAAGCTTGACGCGTTTCAGGTCGTAGCCGATGCGAAAG   1045

BSNT_06097___   1046 TGACGCTTGGCAAACTGCACGGCTTGCTTGAAGGCTATGAGAGCGAGTTC   1095
                     ||||||||||||..|||||||||||..|.||.||.|||.|.||.|..|||
RBAM_036750__   1046 TGACGCTTGGCAGGCTGCACGGCTTATTAGACGGATATAAAAGTGCATTC   1095

BSNT_06097___   1096 GGCACAACGTTCCGGGAGCT-GAAGGACGAATGGCTAGCTGAACGCGAAC   1144
                     |||||..||.|....|| || |||.||.|||||||..||||||||.||.|
RBAM_036750__   1096 GGCACGGCGATTAAAGA-CTGGAAAGATGAATGGCAGGCTGAACGGGACC   1144

BSNT_06097___   1145 GTCTCAGCAAAGTGACGTTTAAGCGGGAAGCATTTGATCCGGAAATCAAA   1194
                     |.|||.||||.||.||.||||..||.||.||.||.||.||||||||.|||
RBAM_036750__   1145 GGCTCGGCAAGGTCACTTTTACACGTGACGCGTTCGAACCGGAAATTAAA   1194

BSNT_06097___   1195 AATCATTTTTCTCAAGAGGTCCTGAATGAATATGCTGACGCGTTGAATAC   1244
                     ||.|||||.||.||.||.||..|.||.||.|||||.||||||.|....||
RBAM_036750__   1195 AACCATTTCTCACAGGATGTGTTAAACGAGTATGCCGACGCGCTCGGGAC   1244

BSNT_06097___   1245 TGAGCTTCCGCAAACAACGGCATTGCTGACAATCAACGAGACGATTCCTG   1294
                     ||||||.|||||.||||||||..||.||||.|||||.||.||||||||||
RBAM_036750__   1245 TGAGCTGCCGCAGACAACGGCGCTGTTGACCATCAATGACACGATTCCTG   1294

BSNT_06097___   1295 AAGACAGTGTCATCATCTGTTCAGCAGGCTCACTCCCAGGAGATTTGCAG   1344
                     ||||.||.|||.|||||.||||.||.||.||.||.||.||||||||||||
RBAM_036750__   1295 AAGATAGCGTCGTCATCAGTTCGGCGGGATCTCTTCCGGGAGATTTGCAG   1344

BSNT_06097___   1345 CGTCTGTGGCATTCTAATGTTCCGAATACGTATCACCTGGAGTATGGGTA   1394
                     ||.|||||||||||.||.||.|||||||||||.|||||.|||||.||.||
RBAM_036750__   1345 CGGCTGTGGCATTCCAACGTCCCGAATACGTACCACCTCGAGTACGGCTA   1394

BSNT_06097___   1395 TTCTTGCATGGGCTATGAAGTGTCCGGGACACTCGGTCTTAAACTGGCCC   1444
                     |||.||||||||.||||||||.||.||.||.|||||.||.||.|||||||
RBAM_036750__   1395 TTCCTGCATGGGATATGAAGTATCAGGCACGCTCGGCCTCAAGCTGGCCC   1444

BSNT_06097___   1445 ACCCTGACAGAGAAGTGTATTCAATCGTCGGAGACGGCAGCTTCCTGATG   1494
                     |.||.||||.||||||.||||||.|||||||.|||||.|||||.||||||
RBAM_036750__   1445 ATCCCGACAAAGAAGTCTATTCACTCGTCGGCGACGGAAGCTTTCTGATG   1494

BSNT_06097___   1495 CTTCATTCTGAATTGATCACGGCGATTCAGTACAACAAGAAAATCAATGT   1544
                     ||.||.||.||..||||.||.|||.||||.||.|||||.|||||||||||
RBAM_036750__   1495 CTGCACTCAGAGCTGATTACCGCGCTTCAATATAACAAAAAAATCAATGT   1544

BSNT_06097___   1545 GCTGCTCTTTGACAACTCAGGATTCGGATGCATCAACAACCTGCAAATGG   1594
                     .|||||.|||||||||||.||||||||.||.||.|||||||||||.||||
RBAM_036750__   1545 CCTGCTTTTTGACAACTCGGGATTCGGCTGTATTAACAACCTGCAGATGG   1594

BSNT_06097___   1595 ATCACGGCAGCGGCAGCTACTATTGCGAGTTCCGAACAGATGACAACCAA   1644
                     |||||||.||||||||.||.|..|||||||||||.|||||.|||||.||.
RBAM_036750__   1595 ATCACGGGAGCGGCAGTTATTTCTGCGAGTTCCGCACAGAGGACAATCAG   1644

BSNT_06097___   1645 ATCCTGAATGTCGATTACGCGAAAGTCGCTGAGGGATACGGCGCGAAAAC   1694
                     ||..|.||.||.|||||||||||.||.||.|||||.||||||||.|||||
RBAM_036750__   1645 ATTTTAAACGTTGATTACGCGAAGGTGGCAGAGGGCTACGGCGCTAAAAC   1694

BSNT_06097___   1695 CTACCGCGCAAACACAGTAGAAGAATTAAAAGCGGCGTTAGAGGATGCGA   1744
                     .|||.|.||.||.||.||.||||||.|.|||||||||.|.||.|||||||
RBAM_036750__   1695 ATACAGAGCCAATACGGTTGAAGAACTGAAAGCGGCGCTTGAAGATGCGA   1744

BSNT_06097___   1745 AGAAACAGAATGTATCAACATTAATTGAAATGAAGGTGCTGCCTAAAACA   1794
                     |.|..||..|.|||||.||.|||||||||||||||||.|||||.|||||.
RBAM_036750__   1745 AAACGCAAGACGTATCCACTTTAATTGAAATGAAGGTTCTGCCGAAAACG   1794

BSNT_06097___   1795 ATGACGGACGGCTATGACAGCTGGTGGCATGTCGGAGTGGCAGAGGTATC   1844
                     |||||||||||||||||||||||||||||||||||.|||||.||.||.||
RBAM_036750__   1795 ATGACGGACGGCTATGACAGCTGGTGGCATGTCGGCGTGGCGGAAGTGTC   1844

BSNT_06097___   1845 TGAACAAGAAAGCGTTCAGAAAGCATACGAAGCAAAAGAGAAAAAGCTGG   1894
                     .||.||..|||||||||||...|||||.|||||.|||||||..||||||.
RBAM_036750__   1845 GGAGCAGAAAAGCGTTCAGCGGGCATATGAAGCGAAAGAGACGAAGCTGA   1894

BSNT_06097___   1895 AATCTGCGAAGCAGTATTAG   1914
                     |.|||||.||||||||.|||
RBAM_036750__   1895 AGTCTGCAAAGCAGTACTAG   1914


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