Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03125 and RBAM_036870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03125___des.1.9828.seq
# -bsequence dna-align/RBAM_036870___des.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03125___des-RBAM_036870___des.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03125___des-RBAM_036870___des.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03125___des
# 2: RBAM_036870___des
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity: 790/1097 (72.0%)
# Similarity: 790/1097 (72.0%)
# Gaps: 85/1097 ( 7.7%)
# Score: 2772.5
#
#
#=======================================
BSNT_03125___ 1 ATGACTGAACAAACCATTGCACATAAACAAAAAC-AGC-----TGACAAA 44
|||||..|.||..|| ||| |..||||||| ||| |.|.|||
RBAM_036870__ 1 ATGACCAATCACGCC---GCA---ACTCAAAAACAAGCATCTTTAAAAAA 44
BSNT_03125___ 45 GCAAGTCGCTGCATTTGCTC---AGCCTGAAACAAAAAACAGCCTGATTC 91
|||.||.||||||||| || .||| ||.|||||..|.||..|.|.||
RBAM_036870__ 45 GCAGGTTGCTGCATTT--TCCGGTGCC-GATACAAAGCATAGTGTCAATC 91
BSNT_03125___ 92 AGCTTTTAAACACGTTTATCCCATTCTTCGGCCTATGGTTTCTTGCTTAT 141
|||||||.|||||||||.|.||.||.||.|.|||.||||||||||||||.
RBAM_036870__ 92 AGCTTTTCAACACGTTTGTGCCGTTTTTTGCCCTTTGGTTTCTTGCTTAC 141
BSNT_03125___ 142 CTCAGCCTCGATGTCTCCTATCTTCTTACGTTAGCATTAACGGTGATTGC 191
.||||||||.||||||||||||||||.||..|.||.||.||.||.||.||
RBAM_036870__ 142 TTCAGCCTCAATGTCTCCTATCTTCTGACCCTCGCCTTTACTGTTATAGC 191
BSNT_03125___ 192 CGCAGGTTTTCTGACAAGAATTTTTATCATCTTCCATGACTGCTGCCATC 241
.||.||.|||.||||||||||.|||||.||.|||||.|||||||||||.|
RBAM_036870__ 192 AGCGGGATTTTTGACAAGAATCTTTATTATTTTCCACGACTGCTGCCACC 241
BSNT_03125___ 242 AATCTTTTTTCAAACAAAA-ACGCTATAACCACATTCTCGGTTTTCTGAC 290
||||.|||||||||||||| |..|| .||||...|..||||.|||.|..|
RBAM_036870__ 242 AATCCTTTTTCAAACAAAAGAAACT-GAACCGGCTGTTCGGGTTTATTTC 290
BSNT_03125___ 291 AGGTGTCCTGACTTTATTCCCGTATCTTCAATGGCAGCACAGCCATTCGA 340
||||||.|||||..|.||.||||..|||||||||||||.||||||.||.|
RBAM_036870__ 291 AGGTGTGCTGACACTGTTTCCGTTCCTTCAATGGCAGCGCAGCCACTCCA 340
BSNT_03125___ 341 TTCATCATGCGACTAGCAGCAATCTGGATAAACGCGGAACAGGAGACATC 390
|||||||||||||.||||||||..|.||||||||.||.||.||.||.||.
RBAM_036870__ 341 TTCATCATGCGACAAGCAGCAACTTAGATAAACGGGGCACCGGCGATATT 390
BSNT_03125___ 391 TGGATGTTAACAGTAAACGAATATAAAGCTGCATCCAGACGAACAAAGCT 440
||||||.|.||.||.||.|||||.||.|..||.|| ||||
RBAM_036870__ 391 TGGATGATGACCGTCAAGGAATACAACGAAGCGTC-----------AGCT 429
BSNT_03125___ 441 TGCA-----------TACAGACTTTATAGAAACCCGTTTATCATGTTTAT 479
||.| ||||||||||||.|.||.||||||||.||||||||
RBAM_036870__ 430 TGGACAAAAGTACGCTACAGACTTTATCGCAATCCGTTTATTATGTTTAT 479
BSNT_03125___ 480 TCTCGGACCGATTTATGTTTTTCTGA-TCACGAACCGTTTTAACAAAAAA 528
||||||.||||||||.||.||||||| ||| .||||||||.||...||||
RBAM_036870__ 480 TCTCGGCCCGATTTACGTATTTCTGATTCA-AAACCGTTTCAATGTAAAA 528
BSNT_03125___ 529 GGCGCAAGACGCAAGGAACG-TGTAAACACATACCTTACGAATCTGGCAA 577
|||||..|.||||||||.|| || .|||||.||..|.|||||...|||.|
RBAM_036870__ 529 GGCGCCCGCCGCAAGGAGCGCTG-GAACACCTATTTCACGAACGCGGCGA 577
BSNT_03125___ 578 TTGTCGCGTTGGCTGCCGCTTGC----TGTCTGATCTTTGGCTGGCAATC 623
|||||...|||||||| ||| ||.|||.|..|.||||||.||..
RBAM_036870__ 578 TTGTCTTATTGGCTGC----TGCGACGTGCCTGCTTGTCGGCTGGGAAAA 623
BSNT_03125___ 624 GTTTTTACTGGTGCAAGGCCCGATATTTCTGATTTCAGGTTCAATCGGTG 673
.|||||.||.||.|||||.|||||.||.||.|||||.||.||||||||.|
RBAM_036870__ 624 CTTTTTGCTTGTTCAAGGTCCGATTTTCCTTATTTCGGGGTCAATCGGCG 673
BSNT_03125___ 674 TTTGGCTCTTTTATGTGCAGCATACCTTTGAAGATTCTTATTTTGAAGCG 723
|.||||||||||||||.|||||.||.|||||.|||||||||||||||||.
RBAM_036870__ 674 TCTGGCTCTTTTATGTTCAGCACACGTTTGAGGATTCTTATTTTGAAGCC 723
BSNT_03125___ 724 GATGAAAACTGGAGCTACGTTCAGGCTGCTGTTGAAGGCAGTTCATTTTA 773
|||||..|.|||..|||.||.|||||.||.||.|||||.||.||.|||||
RBAM_036870__ 724 GATGAGCATTGGGACTATGTGCAGGCCGCGGTAGAAGGAAGCTCCTTTTA 773
BSNT_03125___ 774 TAAACTCCCGAAACTGCTTCAATGGCTAACAGGCAATATTGGTTACCACC 823
.||.||.|||||.||..|.||||||||.|||||||||||.||.|||||.|
RBAM_036870__ 774 CAAGCTTCCGAAGCTTTTGCAATGGCTGACAGGCAATATCGGCTACCATC 823
BSNT_03125___ 824 ACGTTCATCATTTGAGTCCAAAGGTGCCTAACTATAAGCTTGAAGTTGCT 873
|.||.||.||.||.||.||.||.|||||.|||||.|||||.||||..|||
RBAM_036870__ 824 ATGTCCACCACTTAAGCCCGAAAGTGCCGAACTACAAGCTGGAAGCCGCT 873
BSNT_03125___ 874 CATGAACATCACGAACCATTAAAAAACGTACCGACAATCAC-CTTAAAAA 922
|||||....|||||.||.|||||||||||||||||.||.|| ||| ||||
RBAM_036870__ 874 CATGAGGGGCACGAGCCTTTAAAAAACGTACCGACCATTACGCTT-AAAA 922
BSNT_03125___ 923 CAAGCCTGCAATCACTCGCGTTCCGTCTTTGGGATGAAGATAACAAACAG 972
||||.||..||||..|....||||||||.||||||||.||..|.||.||.
RBAM_036870__ 923 CAAGTCTTGAATCCATGAAATTCCGTCTGTGGGATGAGGACGAAAAGCAA 972
BSNT_03125___ 973 TTTGTGTCATTTCGG-----GCTATAAAACATATACCTGTAAGCCTTCCG 1017
|||||..|.|||||| ||...|||| |||.| ||
RBAM_036870__ 973 TTTGTCACCTTTCGGGAGGCGCGGAAAAA-----ACCGG---------CG 1008
BSNT_03125___ 1018 CCTGATTC---ACCAGAAAAACAGAAGC--TGCGGAAGAATGCCTGA 1059
||..||.| ||| ||| ||||.| |...|||.|||||||||
RBAM_036870__ 1009 CCCCATCCGGTACC-GAA----AGAACCTTTAAAGAAAAATGCCTGA 1050
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