Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00904 and RBAM_036880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00904.1.9828.seq
# -bsequence dna-align/RBAM_036880___yxbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00904-RBAM_036880___yxbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00904-RBAM_036880___yxbF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00904
# 2: RBAM_036880___yxbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1244
# Identity: 372/1244 (29.9%)
# Similarity: 372/1244 (29.9%)
# Gaps: 784/1244 (63.0%)
# Score: 611.5
#
#
#=======================================
BSNT_00904 1 ATGTCCAAAGTGGATAGAAGAATAACCAAAAGCCAAGAGGCTATTAAAAT 50
||
RBAM_036880__ 1 ------------------------------------------------AT 2
BSNT_00904 51 AGCTCTGATTGAGCTGATGACTG-----AAAAAAG---TTTTGATCA--- 89
|| |.||||..| |||..|||| |||.||| ||||||.||
RBAM_036880__ 3 -GC-CGGATTCTG-TGACAACTGACATCAAACAAGCGCTTTTGACCATGC 49
BSNT_00904 90 ----------------------TATTACGATTAAGGAAATTTCTGAAAGG 117
|.|.||.||.|||||.||..|.|||.||
RBAM_036880__ 50 TTGGAGAGCGGGATATCCGCCGTGTGACCATGAAGGACATCGCCGAACGG 99
BSNT_00904 118 GCAAATGTAAACCGGGGAACAATCTATCTTCATTACTTAGATAAATTT-- 165
||..||||.|.||||||.|||.|.||.|||.|||||..||||||||.|
RBAM_036880__ 100 GCGCATGTGAGCCGGGGGACACTGTACCTTTATTACGAAGATAAATATGC 149
BSNT_00904 166 ----------GATCTATTAGAAAAAAT----------------------- 182
|||.||..||||.||||
RBAM_036880__ 150 GATTTTAGAGGATATAGAAGAAGAAATGAAAGACGGGCTGAGCGAAGCGC 199
BSNT_00904 183 --TATG-------GAAGAGCATATAAACA------------ATATGGGGG 211
|||| ||||| |||||.| |.||||.||
RBAM_036880__ 200 TGTATGATTCGCTGAAGA----ATAAAGATGTGCTTCATTTACATGGCGG 245
BSNT_00904 212 AT-------------------------TTTTG-TGAGTCGGCAGCTG--- 232
|| ||||| ||| ||||||.|.|
RBAM_036880__ 246 ATGGCAAAAAGTGCATCCGACCCTGTCTTTTGTTGA-TCGGCATCGGGTG 294
BSNT_00904 233 --------AA-----ATGGACTGGATTGAATCGAC---TGTACACT---- 262
|| ||||||.|.|.|.||..|.| |.|.||||
RBAM_036880__ 295 TTTTTTCAAACGATGATGGACCGCAATAAAATGCCCTATTTTCACTTTCA 344
BSNT_00904 263 ------------------------GCATG--------------------- 267
|||||
RBAM_036880__ 345 TGCTTTTTTAAAAGATGTGTTCCGGCATGATGTGCTGCTGTCACCGGTCA 394
BSNT_00904 268 ----GAATACCT-------TGA----GA---GTA-----ATTA------T 288
|.||..|| ||| || ||| |||| |
RBAM_036880__ 395 ATGCGGATTTCTCACCGACTGAACAGGATATGTACATTCATTACCGCGCT 444
BSNT_00904 289 TTATTC---TTTTCGACGATGTT-----------------AGCCAG---- 314
||||.| |.|.|||...|||| ||||.|
RBAM_036880__ 445 TTATACACGTATGCGATTGTGTTGTACTGGCTGAATGAGGAGCCCGGGGC 494
BSNT_00904 315 ------TGAAGGCGCTC---------------GATAT--TTTCGCAGTCA 341
.||| |||.|| |||.| |||| |||
RBAM_036880__ 495 ATCCCCGGAA-GCGATCAGCGGACAGGTGTGGGATTTGATTTC----TCA 539
BSNT_00904 342 ------GTTCCTTA-----AGTTT-------------------------- 354
||| ||| .||||
RBAM_036880__ 540 AAAACGGTT--TTACTGGCTGTTTGGCCGCCGGATGCCGGAACAAGAAGA 587
BSNT_00904 355 --AATATC----------------------GAAGAGTTCAGG-------- 372
||.|.| ||.||| .||||
RBAM_036880__ 588 AAAAAAGCCCGCCGACCGCCGGGTGACAAGGACGAG-GCAGGCCTTGCAA 636
BSNT_00904 373 ------------------------------AAAGATGTA------GATGT 386
||||| ||| || |
RBAM_036880__ 637 GAAGCCATGATCGGCTTAATGGCAGAAAAAAAAGA-GTACGCGGCGA--T 683
BSNT_00904 387 AACGA------------------AAGGCAA-------------------- 398
.|||| ||.||||
RBAM_036880__ 684 TACGATTTCCGATATTGCCCGTCAAAGCAACCTCCGCCGTGCCACTTTTT 733
BSNT_00904 399 --GA--ATTACGGC--CAAAGTGAAGATGTCATTGTTGAA----TTTAT- 437
|| ||||||.| |||| |||| |||||.|||| .|.||
RBAM_036880__ 734 ATGACCATTACGCCAACAAA--GAAG----CATTGCTGAAAACGATCATC 777
BSNT_00904 438 -AGCAA--ATGCTTACG--------TAGG---------GGTAGTGGAATG 467
|.||| |||| || |.|| |||| ||.|
RBAM_036880__ 778 CATCAATCATGC---CGGGATCTGATCGGATTATTGACGGTA----AAAG 820
BSNT_00904 468 G--------------------TGGTTAAAAAACGAAATGC----CTTATC 493
| ||| ||.||.||.|| || ||..||
RBAM_036880__ 821 GAGAGCCTGCCGATTGCTCCATGG--AAGAAGCGGAA-GCCGCGCTCGTC 867
BSNT_00904 494 CGCCTCGTGTCATGGCA--------------------------------G 511
||.|||.|.|| |||| |
RBAM_036880__ 868 CGTCTCTTTTC--GGCACTGTCGGAAGGCCTGCCGCTCGTCCATTTTCTG 915
BSNT_00904 512 AAAAAGTG----GG------------------GGAGTTATT-AGAGCG-- 536
|.|.|||| || |||..|.|| ||||||
RBAM_036880__ 916 AGAGAGTGTTCCGGAGTGCCTGACGTCATCCCGGAAATGTTCAGAGCGCT 965
BSNT_00904 537 ------GATTTTATAA---------------------------------- 546
| ||||||..
RBAM_036880__ 966 GCAATCG-TTTTATCTTCATCAGCCCCTGCACATTCAGGCGGGCAAAAAA 1014
BSNT_00904 546 -------------------------------------------------- 546
RBAM_036880__ 1015 CTCTATGCATATTATGTCGCGTCCATGCTCGCCGGCTTGATTCAATATCG 1064
BSNT_00904 546 -------------------------------------------------- 546
RBAM_036880__ 1065 TCTTCATGAAGGAAAAGACCACGCGCCGGATATACTGGCCCGAGAGTTTC 1114
BSNT_00904 546 -------------------------------------------- 546
RBAM_036880__ 1115 TGCAGTTTTTGGATATAAAGAAGTATCGGGTGATTTTGCTGTGA 1158
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