Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04813 and RBAM_037040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_04813___pucB.1.9828.seq
# -bsequence dna-align/RBAM_037040.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04813___pucB-RBAM_037040.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04813___pucB-RBAM_037040.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04813___pucB
# 2: RBAM_037040
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity: 314/722 (43.5%)
# Similarity: 314/722 (43.5%)
# Gaps: 301/722 (41.7%)
# Score: 545.5
#
#
#=======================================
BSNT_04813___ 1 ATGAGAAGCCCCTATCTGATCGGCGTGTTTCTCGCTGCCGGCAAAAGCAG 50
RBAM_037040 0 -------------------------------------------------- 0
BSNT_04813___ 51 AAGAATGGGCCAAAACAAGCTGGCTTTGCCGCTAAAAGGAGAAAACATAG 100
|| |
RBAM_037040 1 ----------------------------------------------AT-G 3
BSNT_04813___ 101 GCTCACTTTCTTTGAAAACTGCTCTGTCGTCCCGCCTT-GATCACGTGCT 149
|||| |.||||.|||..|||..| |.|..|| |||||..|..|
RBAM_037040 4 GCTC--------TTAAAAATGCCTTGTTAT-CTGAATTAGATCATATTTT 44
BSNT_04813___ 150 GGTCGT--CGAGCGGACA-GAACATGC-CTCCCTTGAGT---GGATAGGA 192
.||..| || |||.| |.|.||.| ||.|.|||..| ||||
RBAM_037040 45 CGTTATAACG---GGAAAGGGAGATCCACTGCATTGGCTTTCGGAT---- 87
BSNT_04813___ 193 GCGCCGT-----------ATCACGCTCCGCCTTT-TCAAAAACGCTGGAG 230
|| || ||||| |||||.|.| |||||
RBAM_037040 88 -----GTTTTCTTTTTAAAT---------CCTTTATCAAATAAG-TGGAG 122
BSNT_04813___ 231 -CCTGCACGTTTGCCAAGATGCAGAAAAGGGTCAGGGGCATTC-AGTCA- 277
|..||| |..||..|..|.||.||.|||||.||.||.||||| |..||
RBAM_037040 123 TCAGGCA-GAATGTGAGCAAGCGGATAAGGGCCAAGGCCATTCTATACAA 171
BSNT_04813___ 278 -GCAGCGGGGTGAGAAAA----GCAGAAAGCATGGGGGCGGACGGCGTTG 322
|| ||.|.|.|||| |||||...| |.|||.||||..|||.
RBAM_037040 172 TGC----GGTTTACAAAAAGCGGCAGAGTAC---GAGGCTGACGCTGTTA 214
BSNT_04813___ 323 TCATTTTGTTAGCCGACCAG----------CCTCAGCTTTCCGTCGATCA 362
|||||.|..|.||.||.||| ||||||.| ||||
RBAM_037040 215 TCATTCTCCTTGCAGATCAGCCGTTTGTCACCTCAGAT--------ATCA 256
BSNT_04813___ 363 TCTCAATGCCCTTGTGGCTCTGGCTCCT--------GAG---------TC 395
|||||.|..|..| ||..|||| ||| ||
RBAM_037040 257 --TCAATACATTAAT-----TGATTCCTATCAAAAGGAGCGCCGTTATTC 299
BSNT_04813___ 396 ATTT---GCCG-TG----TCATCGTTTT--TAGGGGCGTTGACCCCGCCA 435
|||| |||| || |||||.|.|| ||.| |||.|||
RBAM_037040 300 ATTTATCGCCGCTGAAAATCATCATCTTCCTATG---------CCCCCCA 340
BSNT_04813___ 436 ATCTACTTCTC--GTCGGCTTGTTTTCC-TTATGTAAAGGGGTTAACGGG 482
.|.|| ||||| .|| ..|||||||| .||| |..|...|||||.|||
RBAM_037040 341 TTTTA-TTCTCAAATC--AATGTTTTCCGGTAT-TGCATCAGTTAAAGGG 386
BSNT_04813___ 483 AGATGAAGGGGCTC-GCAGG--CTCC-TGAAA-----------AGCGGA- 516
||||.|.||.||.| |||.| .||| ||||| |..|||
RBAM_037040 387 AGATCAGGGCGCCCGGCACGTCATCCGTGAAAGTATGATCAATACGGGAA 436
BSNT_04813___ 517 -------CAGCTTGGAGCAGGA----GTGGTTTTGGAGGCAAAG--GATA 553
|||||| .||.|| .||.||||..|.| |.| ||||
RBAM_037040 437 AAATGATCAGCTT---TCAAGACCCTTTGCTTTTTTATG--ACGTCGATA 481
BSNT_04813___ 554 GCGGTGAGTTGGACGATATTGATACAC--CCGAGGAATATGACATGGTAA 601
..|.||| |.||| ||||.| |.|..||||| ||
RBAM_037040 482 CAGTTGA--------AGATT-ATACGCTGCTGCTGAATA---------AA 513
BSNT_04813___ 602 -----GGAGGGCGATGGCTTGA 618
|||| |||
RBAM_037040 514 TTCGGGGAG----------TGA 525
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