Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06223 and RBAM_037590

See Amino acid alignment / Visit BSNT_06223 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence dna-align/BSNT_06223___yybT.1.9828.seq
#    -bsequence dna-align/RBAM_037590___yybT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06223___yybT-RBAM_037590___yybT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06223___yybT-RBAM_037590___yybT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06223___yybT
# 2: RBAM_037590___yybT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1983
# Identity:    1619/1983 (81.6%)
# Similarity:  1619/1983 (81.6%)
# Gaps:           6/1983 ( 0.3%)
# Score: 6603.0
# 
#
#=======================================

BSNT_06223___      1 ATGCCAAGCTTTTATGAAAAACCGCTGTTTCGGTATCCCATCTATGCATT     50
                     |||||.||.|||||||||||||||.|||||||||||||||||||||||||
RBAM_037590__      1 ATGCCTAGTTTTTATGAAAAACCGTTGTTTCGGTATCCCATCTATGCATT     50

BSNT_06223___     51 GATTGCTCTGTCAATTATTACAATCCTCATCAGCTTTTATTTTAACTGGA    100
                     ||||||..|||||||.||.|.|||.|||||||||.||||.|||||||||.
RBAM_037590__     51 GATTGCATTGTCAATCATCATAATTCTCATCAGCATTTACTTTAACTGGC    100

BSNT_06223___    101 TATTAGGAACCGTCGAAGTGCTGCTGCTGGCAGTTATTTTGTTTTTTATT    150
                     |..|||||.||.|||..||..|||||||.||.||.||.||||||||.|||
RBAM_037590__    101 TGATAGGAGCCATCGGCGTTGTGCTGCTCGCCGTGATCTTGTTTTTCATT    150

BSNT_06223___    151 AAGCGTGCTGATTCTCTTATTCGACAAGAGATTGATGCTTATATTTCTAC    200
                     ||||||||.||||||||.||..||.||||.|||||.|.||||||.||.||
RBAM_037590__    151 AAGCGTGCGGATTCTCTGATCAGAAAAGAAATTGACGATTATATCTCCAC    200

BSNT_06223___    201 GTTGTCCTACAGGTTGAAAAAAGTCGGTGAAGAGGCATTGATGGAAATGC    250
                     |||.||.||.||.|||||||||||.||.|||||||||||.||||||||||
RBAM_037590__    201 GTTATCGTATAGATTGAAAAAAGTAGGCGAAGAGGCATTAATGGAAATGC    250

BSNT_06223___    251 CGATTGGAATCATGCTTTTTAATGACCAATATTATATAGAATGGGCAAAT    300
                     |.||.||.||.|||||.||||||||.||||||||.||.||.|||||.|||
RBAM_037590__    251 CTATCGGGATTATGCTGTTTAATGATCAATATTACATTGAGTGGGCGAAT    300

BSNT_06223___    301 CCGTTTCTTTCCTCTTGCTTTAATGAAAGCACTTTAGTGGGGAGATCACT    350
                     ||||||.|.||.||.||.||||||||||||||..|.||.||..|.||.||
RBAM_037590__    301 CCGTTTTTGTCTTCCTGTTTTAATGAAAGCACGCTCGTCGGACGGTCGCT    350

BSNT_06223___    351 TTACGATACTTGTGAATCGGTAGTGCCGCTTATCAAACAAGAGGTGGAAT    400
                     .||.||.||.||.||..|.||.||||||||.|||||.||.|||||.||.|
RBAM_037590__    351 GTATGACACATGCGAGGCCGTCGTGCCGCTGATCAAGCAGGAGGTCGATT    400

BSNT_06223___    401 CAGAAACGGTTACATTGAATGACCGCAAGTTTAGGGTTGTCATCAAACGG    450
                     |.||||||.|.||.||||||||.||.|||||||..||.||.||.|||.|.
RBAM_037590__    401 CGGAAACGATCACCTTGAATGAGCGGAAGTTTAAAGTAGTGATTAAAAGA    450

BSNT_06223___    451 GATGAGCGTCTGTTATATTTCTTTGATGTAACAGAACAAATTCAGATTGA    500
                     ||||||||.|||.|.||||||||||||||.||||||||.|||||||||||
RBAM_037590__    451 GATGAGCGCCTGCTTTATTTCTTTGATGTGACAGAACAGATTCAGATTGA    500

BSNT_06223___    501 AAAGCTATATGAAAACGAAAGAACCGTCCTGGCATATATTTTCCTTGATA    550
                     |||||..||.|||||.||.||||||||.|||||||||||.|||.|.||||
RBAM_037590__    501 AAAGCAGTACGAAAATGAGAGAACCGTGCTGGCATATATCTTCTTAGATA    550

BSNT_06223___    551 ACTATGATGATGTGACACAAGGATTGGATGACCAGACGAGAAGCACGATG    600
                     ||||||||||.||.|||||.||..||||||||||.||||||||.||||||
RBAM_037590__    551 ACTATGATGACGTCACACAGGGGCTGGATGACCAAACGAGAAGTACGATG    600

BSNT_06223___    601 AACAGCCAGGTGACATCTTTGCTGAACGCTTGGGCGCAGGAGTACGGGAT    650
                     |||||||||||.||.||.||..|.||.||.|||||||||||||||||.||
RBAM_037590__    601 AACAGCCAGGTCACCTCATTATTAAATGCGTGGGCGCAGGAGTACGGCAT    650

BSNT_06223___    651 CTTCTTGAAAAGGACGTCTTCAGAGCGCTTTATCGCTGTACTTAATGAAC    700
                     .|||.|||||.|||||||.||.|||||.||||||||.||..|.|||||||
RBAM_037590__    651 TTTCCTGAAACGGACGTCCTCGGAGCGGTTTATCGCGGTGTTAAATGAAC    700

BSNT_06223___    701 ACATCTTAACTGAACTCGAAAATTCGAAGTTTTCGATTCTTGATGAAGTG    750
                     ||||.|||||.||.||.|||||..||||.|||||||||.|.||||||.|.
RBAM_037590__    701 ACATTTTAACGGAGCTTGAAAACGCGAAATTTTCGATTTTGGATGAAATC    750

BSNT_06223___    751 CGGGAAAAAACCTCGTTTGACGGTGTAGCGCTGACGTTAAGCGTCGGTGT    800
                     ||.||||||||.||..||.||..||||.|..||||..|.|||.||||..|
RBAM_037590__    751 CGAGAAAAAACATCCGTTCACACTGTATCTTTGACCCTCAGCATCGGGAT    800

BSNT_06223___    801 CGGGGCTTCAGTCTCTTCCCTGAAAGAACTTGGCGATTTGGCGCAATCCA    850
                     |||.||.||.||.||||||.||||.||.|||||.|||.|||||||.||||
RBAM_037590__    801 CGGCGCATCGGTTTCTTCCTTGAAGGAGCTTGGAGATCTGGCGCAGTCCA    850

BSNT_06223___    851 GCTTGGACTTAGCACTGGGACGCGGCGGAGACCAGGTAGCCATTAAGCTG    900
                     ||.|.||.||.||.||.||.|||||.||.|||||.||.||.||.||..||
RBAM_037590__    851 GCCTCGATTTGGCTCTCGGCCGCGGAGGCGACCAAGTGGCGATCAAAATG    900

BSNT_06223___    901 CCAAACGGCAAGGTGAAGTTTTACGGCGGTAAAACAAACCCAATGGAGAA    950
                     ||.||||||||||||||.|||||||||||.|||||.||.||.||||||||
RBAM_037590__    901 CCGAACGGCAAGGTGAAATTTTACGGCGGCAAAACGAATCCGATGGAGAA    950

BSNT_06223___    951 ACGAACAAGGGTGCGGGCCCGCGTGATTTCTCACGCTTTAAAGGAAATCG   1000
                     .||.|||||||||||.|||||.||||||||||||||..|.||||||||.|
RBAM_037590__    951 GCGCACAAGGGTGCGCGCCCGGGTGATTTCTCACGCGCTCAAGGAAATTG   1000

BSNT_06223___   1001 TCACCGAAAGCAGCAATGTGATTATCATGGGGCATAAATTCCCCGACATG   1050
                     ||.|.||||||||||||||.|||||.||||||||.|||||.||.||.|||
RBAM_037590__   1001 TCTCAGAAAGCAGCAATGTCATTATTATGGGGCACAAATTTCCTGATATG   1050

BSNT_06223___   1051 GATTCTATCGGCGCAGCGATCGGGATTTTAAAGGTGGCTCAGGCAAATAA   1100
                     ||..|..||||.||.||.|||||.||.||.||||||||.|||||.||...
RBAM_037590__   1051 GACGCAGTCGGAGCCGCAATCGGAATATTGAAGGTGGCGCAGGCCAACGG   1100

BSNT_06223___   1101 CAAAGATGGTTTTATCGTGATTGACCCAAATCAAATCGGATCAAGTGTGC   1150
                     ||||||.||.|..|||||.|||||.||.||.||.|||||||||||.||.|
RBAM_037590__   1101 CAAAGACGGCTACATCGTCATTGATCCGAACCAGATCGGATCAAGCGTTC   1150

BSNT_06223___   1151 AGCGTTTGATTGGGGAAATCAAAAAATATGAAGAACTGTGGTCAAGATTT   1200
                     |||||.||||||..|||||.||||||||||||||.||||||||..|.||.
RBAM_037590__   1151 AGCGTCTGATTGAAGAAATTAAAAAATATGAAGAGCTGTGGTCGCGGTTC   1200

BSNT_06223___   1201 ATTACGCCTGAAGAAGCAATGGAAATTTCCAATGATGACACACTGCTTGT   1250
                     ||.|||||.|||||.||.|||||||||||.|||||.|||||.||||||||
RBAM_037590__   1201 ATCACGCCGGAAGAGGCGATGGAAATTTCAAATGACGACACGCTGCTTGT   1250

BSNT_06223___   1251 GATCGTTGATACACATAAGCCGTCACTCGTTATGGAGGAACGGCTGGTCA   1300
                     ..||||||||||||||||.|||||.||.||.|||||.||.||.||.||.|
RBAM_037590__   1251 CGTCGTTGATACACATAAACCGTCCCTTGTGATGGAAGAGCGTCTCGTGA   1300

BSNT_06223___   1301 ATAAAATTGAACATATCGTGGTCATCGACCATCACCGCAGAGGTGAGGAG   1350
                     |.|||||.||.||.|||||.||.||.|||||.|||||||||||.|||||.
RBAM_037590__   1301 ACAAAATCGAGCACATCGTTGTGATTGACCACCACCGCAGAGGCGAGGAA   1350

BSNT_06223___   1351 TTTATCAGAGATCCGCTGCTCGTTTATATGGAACCATACGCTTCTTCCAC   1400
                     |||||.|.|||.||||||||||||||||||||.|||||||||||.|||||
RBAM_037590__   1351 TTTATTAAAGACCCGCTGCTCGTTTATATGGAGCCATACGCTTCATCCAC   1400

BSNT_06223___   1401 AGCGGAATTGGTGACAGAGCTGCTTGAATATCAGCCGAAGCGCTTAAAAA   1450
                     .||.|||.|.|||||.||||||||||||||.|||||||||||..|.||||
RBAM_037590__   1401 CGCAGAACTCGTGACGGAGCTGCTTGAATACCAGCCGAAGCGGCTCAAAA   1450

BSNT_06223___   1451 TCAATATGATTGAAGCTACAGCCCTATTAGCTGGTATAATAGTGGATACA   1500
                     ||||||||||||||||.||.|||||.|||||||||||||||||||||||.
RBAM_037590__   1451 TCAATATGATTGAAGCGACGGCCCTGTTAGCTGGTATAATAGTGGATACG   1500

BSNT_06223___   1501 AAGAGCTTTTCTCTCCGCACGGGCTCGCGGACTTTTGATGCGGCTTCTTA   1550
                     |||||.|||||.||.|||||||||||||||||.||.||.||.||||||||
RBAM_037590__   1501 AAGAGTTTTTCCCTTCGCACGGGCTCGCGGACGTTCGACGCCGCTTCTTA   1550

BSNT_06223___   1551 TTTAAGGGCAAAAGGCGCCGACACGGTGCTGGTGCAG-AAGTTCCTGAAA   1599
                     |||.||.||.||||||||.||.|||||.||||||||| ||||| ||.|||
RBAM_037590__   1551 TTTGAGAGCGAAAGGCGCAGATACGGTTCTGGTGCAGAAAGTT-CTCAAA   1599

BSNT_06223___   1600 GAAACCGTTGATTCCTATATTCAA-CGGGCGAAGCTGATCCAGCATACGG   1648
                     |||.||||.|.|||.|||| |||| ||||||||.|||||||||||||| |
RBAM_037590__   1600 GAATCCGTCGGTTCTTATA-TCAAGCGGGCGAAACTGATCCAGCATAC-G   1647

BSNT_06223___   1649 TC-CTCTATAAAGATAACATTGCGATTGCTTCTCTTCCTGAAAATGAAGA   1697
                     || ||.||||||||..|.||.||||||||||||||||||||.||.|||||
RBAM_037590__   1648 TCTCTTTATAAAGAACATATCGCGATTGCTTCTCTTCCTGAGAACGAAGA   1697

BSNT_06223___   1698 GGAATACTTCGATCAAGTGCTGATTGCGCAGGCTGCCGATTCGCTGCTGT   1747
                     |||.|||||.||.||.|||||||||||||||||.||.|||||.||..|.|
RBAM_037590__   1698 GGAGTACTTTGACCAGGTGCTGATTGCGCAGGCGGCTGATTCCCTCTTAT   1747

BSNT_06223___   1748 CGATGAGTGAGGTTGAGGCTTCATTTGCGGTGGCGAGACGGGATGAACAA   1797
                     ||||||||||.||.||.||||||||||||||.||.|||||||||||.||.
RBAM_037590__   1748 CGATGAGTGAAGTGGAAGCTTCATTTGCGGTAGCCAGACGGGATGAGCAT   1797

BSNT_06223___   1798 ACGGTTTGTATCAGTGCGCGGTCGCTTGGCGAGGTAAATGTTCAGATCAT   1847
                     |||||.||.|||||||||.|.|||||.||||||||.|||||.|||||.||
RBAM_037590__   1798 ACGGTGTGCATCAGTGCGAGATCGCTGGGCGAGGTCAATGTGCAGATTAT   1847

BSNT_06223___   1848 CATGGAGGCCCTGGAAGGCGGAGGGCATTTAACAAATGCGGCGACTCAGT   1897
                     .||||||||.|||||.|||||||||||||||||.||||||||.||.||||
RBAM_037590__   1848 TATGGAGGCGCTGGATGGCGGAGGGCATTTAACCAATGCGGCAACCCAGT   1897

BSNT_06223___   1898 TGTCCGGCATTTCAGTTTCTGAAGCGCTGGAACGGCTGAAGCACGCCATA   1947
                     |.||.||||||||.||.||.||||||||.|..|||||||||.|.|||||.
RBAM_037590__   1898 TATCGGGCATTTCTGTCTCAGAAGCGCTCGTCCGGCTGAAGGAAGCCATT   1947

BSNT_06223___   1948 GATGAGTATTTTGAGGGAGGCGTACAGAGATGA   1980
                     |||||.||||||||.||||||||.|||||||||
RBAM_037590__   1948 GATGAATATTTTGAAGGAGGCGTTCAGAGATGA   1980


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