Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06231 and RBAM_037620

See Amino acid alignment / Visit BSNT_06231 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:41
# Commandline: needle
#    -asequence dna-align/BSNT_06231___yybR.1.9828.seq
#    -bsequence dna-align/RBAM_037620___yybR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06231___yybR-RBAM_037620___yybR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06231___yybR-RBAM_037620___yybR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: RBAM_037620___yybR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 389
# Identity:     285/389 (73.3%)
# Similarity:   285/389 (73.3%)
# Gaps:          28/389 ( 7.2%)
# Score: 1065.5
# 
#
#=======================================

BSNT_06231___      1 ATGAGTGGAAAAAAGAATATATACCCGAACAAAGAAGGCTGTCCAGTTGA     50
                                 |.|||.|||||.|||||.||||||||.|||||.|||||
RBAM_037620__      1 ------------ATGAACATATATCCGAATAAAGAAGGTTGTCCGGTTGA     38

BSNT_06231___     51 ATTTACTCTAGATGTCATTGGCGGAAAGTGGAAAGGAATTCTTTTTTATC    100
                     |.|.||.||....||.||.||||||||||||||.||.|||.|.|||||||
RBAM_037620__     39 ACTGACGCTTTCCGTTATCGGCGGAAAGTGGAAGGGTATTTTGTTTTATC     88

BSNT_06231___    101 ACATGATAGATGGCAAGAAACGATTTAATGAGTTTCGGCGAATCTGCCCG    150
                     |.|||||.|..||.||.||.||.|||||||||||||||||.||.|||||.
RBAM_037620__     89 ATATGATCGGCGGAAAAAAGCGGTTTAATGAGTTTCGGCGCATTTGCCCC    138

BSNT_06231___    151 AGTATTACTCAAAGAATGCTTACTCTTCAGCTGAGGGAGCTGGAAGCGGA    200
                     ||.|||||.||..|.|||||.||.||||||||..|.|||||.||.|||||
RBAM_037620__    139 AGCATTACGCAGCGTATGCTGACGCTTCAGCTTCGCGAGCTTGAGGCGGA    188

BSNT_06231___    201 CGGCATCGTGCATCGTGAGGTTTATCAACAGGTGCCGCCCAAGGTTGAGT    250
                     |||||||||||||||.|||||.|||||.||||||||.||.|||||.||||
RBAM_037620__    189 CGGCATCGTGCATCGCGAGGTATATCAGCAGGTGCCTCCAAAGGTGGAGT    238

BSNT_06231___    251 ACTCTCTGACGGAATTCGGGCGAACGCTTGAACCGATTGTTTTGCAAATG    300
                     |.|||||.||.||||||||..|..||||.||||||||.||||||||||||
RBAM_037620__    239 ATTCTCTTACCGAATTCGGCAGGTCGCTGGAACCGATCGTTTTGCAAATG    288

BSNT_06231___    301 AAAGAATGGGGAGAATCCAACAGAGACGTGCTGGAATCTTATCGTTCG--    348
                     ||..||||||||||..|||||.|.||..|.||.||..|.||.||   |  
RBAM_037620__    289 AAGAAATGGGGAGATGCCAACCGGGAGTTTCTCGAGGCATACCG---GGA    335

BSNT_06231___    349 ---AACGGCTTACTGAAGGATCAG------CAGAAATAG    378
                        ||||.| |.||.|| ||||||      ||.|||||.
RBAM_037620__    336 AAAAACGTC-TCCTCAA-GATCAGTCCGCTCAAAAATAA    372


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