Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00890 and RBAM_037640

See Amino acid alignment / Visit BSNT_00890 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_00890.1.9828.seq
#    -bsequence dna-align/RBAM_037640.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00890-RBAM_037640.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00890-RBAM_037640.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00890
# 2: RBAM_037640
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity:     308/1039 (29.6%)
# Similarity:   308/1039 (29.6%)
# Gaps:         638/1039 (61.4%)
# Score: 594.5
# 
#
#=======================================

BSNT_00890         0 --------------------------------------------------      0
                                                                       
RBAM_037640        1 GTGTCTATCCTGGAAAAACACGCTGCTCTTTCTTATTCACGAACAACAGG     50

BSNT_00890         0 --------------------------------------------------      0
                                                                       
RBAM_037640       51 CATTTGGCTTGTGCTGACAGGAGCTATCTTATGGGGGGTCTCGGGAACGG    100

BSNT_00890         0 --------------------------------------------------      0
                                                                       
RBAM_037640      101 TTGCCCAGTATCTGTTCCAGCACCGCCATTTTAATACAGAATGGCTGACT    150

BSNT_00890         0 --------------------------------------------------      0
                                                                       
RBAM_037640      151 TCAGTGCGCCTTCTGGTGTCAGGGGCGCTTCTGCTCGGCATCGCGTACCG    200

BSNT_00890         0 --------------------------------------------------      0
                                                                       
RBAM_037640      201 CAAAGAAAAAGGACGGATATGGGCTGTTTGGAAAGACAGACGGGACAGAA    250

BSNT_00890         1 -----------------------------TTGTTAACAAATG--GTTCAA     19
                                                  .|||||      |  ||||||
RBAM_037640      251 TTCCCCTTCTTTTATTCGGGATTTTCGGAATGTTA------GGCGTTCAA    294

BSNT_00890        20 TATCTCAACT---------TTCAGTGC-------CGGCAGCTG-------     46
                     ||...|.|||         ||.|||.|       ||||.||||       
RBAM_037640      295 TACACCTACTTCGCGGCAATTGAGTACGGCAACGCGGCCGCTGCTACCGT    344

BSNT_00890        47 ----CAGTAGTATGGGG--AG---------------TTTTATCAGGATTC     75
                         ||||| |.|.|||  ||               |||||.|  |||||
RBAM_037640      345 TCTTCAGTA-TTTAGGGCCAGCGATCATTACATGCTTTTTAGC--GATTC    391

BSNT_00890        76 GCG-----------------GC-----AGCTTTTTATACT-------TTA     96
                     |||                 ||     |||||      ||       |||
RBAM_037640      392 GCGCAAAGAGAATTCCTTCAGCAAAAGAGCTT------CTGGCCGTCTTA    435

BSNT_00890        97 TATGCCGTTG-------GTTTATT--------------AAAT-----AAA    120
                     |..||.||||       .||.|||              .|||     ||.
RBAM_037640      436 TTGGCGGTTGCCGGCACATTCATTTTGGTCACGCACGGTAATGTCGGAAG    485

BSNT_00890       121 TTTG-----ATTC--TCTTGTCGTTGTAGGTTGGGCTATGATTATTGGCG    163
                     ..||     ||.|  |||.|.|||..|   |||||..||.|.| |.||||
RBAM_037640      486 CCTGTCCATATCCGGTCTGGCCGTCTT---TTGGGGCATCAGT-TCGGCG    531

BSNT_00890       164 GTTTTGCATTGG-GTTTTA-----TCCATCCGC---------------CA    192
                       ||||||.||| ||||||     |.||.||||               .|
RBAM_037640      532 --TTTGCACTGGCGTTTTACACCCTTCAGCCGCATCGTCTGCTGAAGAAA    579

BSNT_00890       193 TGGCAACTGGATTTTCAACGATTA--------------ACTGCTGA--GG    226
                     |||     |||   ||..|.||||              | ||||||  ||
RBAM_037640      580 TGG-----GGA---TCGGCCATTATTGTCGGATGGGGCA-TGCTGATCGG    620

BSNT_00890       227 CGTA----------------------------------------------    230
                     ||.|                                              
RBAM_037640      621 CGGAGCCGCCCTCAGCTTGATCCGCCCGCCCTGGAAATTTGAAGGCGAGT    670

BSNT_00890       231 ----------TGCATAT------ATTTTATTTGTGAT-ATTATTTGGAAC    263
                               |||||||      |||.|.|||.|.|| ||| ||.|||||
RBAM_037640      671 GGTCCTTTCCTGCATATGCCGCGATTGTGTTTATCATCATT-TTCGGAAC    719

BSNT_00890       264 AATGATTGCGTTCTGGTTCTTCATAAAAAGCTTGGAAAGCC-----TTTC    308
                     ..|.||.||.||    ||.||..||     |||||||||||     |.||
RBAM_037640      720 GCTCATCGCTTT----TTATTGCTA-----CTTGGAAAGCCTGAAATATC    760

BSNT_00890       309 ----TCCCAAAGAAACAAGCCTATTAGGCAGTTTAGAACCTCTATCCGCT    354
                         |.||...|||||.|||||..|.|.|.||..|||.||.||.||.||.
RBAM_037640      761 TGAGTGCCTCTGAAACCAGCCTGCTCGCCTGTGCAGAGCCGCTGTCGGCA    810

BSNT_00890       355 GTTGTAACAACTGTCGTTTGGTTAAAAGCGCCATTTGGTTCTTTTC----    400
                     |.|.|...|.||||..|.||       ||..|||   ||||..|||    
RBAM_037640      811 GCTTTTTTAGCTGTTATCTG-------GCTGCAT---GTTCCCTTCGGAA    850

BSNT_00890       401 ------AATGGATTGGTGCTATTTGT-ATTATAG---GAATAACTTTAAT    440
                           |||||.|.|||.|| |||.| |||.|||   ..||..|||||.|
RBAM_037640      851 TATCAGAATGGCTGGGTACT-TTTCTGATTTTAGCCACCATCGCTTTATT    899

BSNT_00890       441 ATTGGCTTT-------AAATAAAGAGCCTTCTGTGCAGAGTGAAAAGTCG    483
                     ||   ||.|       ||||||                            
RBAM_037640      900 AT---CTATCAAGAAAAAATAA----------------------------    918

BSNT_00890       484 ATATTAAAGATTAGGAATCATGCAAATCGGGATATATAG    522
                                                            
RBAM_037640      918 ---------------------------------------    918


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