Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01919 and RBAM_037690

See Amino acid alignment / Visit BSNT_01919 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_01919___yjbB.1.9828.seq
#    -bsequence dna-align/RBAM_037690___yfmI1.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01919___yjbB-RBAM_037690___yfmI1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01919___yjbB-RBAM_037690___yfmI1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01919___yjbB
# 2: RBAM_037690___yfmI1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1422
# Identity:     584/1422 (41.1%)
# Similarity:   584/1422 (41.1%)
# Gaps:         666/1422 (46.8%)
# Score: 977.0
# 
#
#=======================================

BSNT_01919___      1 ---------ATGATAACATTTACAATTAGAGGAAAAAAACGGAGGCGAAA     41
                              .||||                         |||||||   |
RBAM_037690__      1 ATGTTTTGTCTGAT-------------------------CGGAGGC---A     22

BSNT_01919___     42 TACGATTCAATTTCTGCATAACAAAAATGTTTT--------------TGC     77
                     |    |||  |||.||||    |...|||.|||              .||
RBAM_037690__     23 T----TTC--TTTTTGCA----ACGGATGGTTTGCTCCGATAAAAAGCGC     62

BSNT_01919___     78 ACT-ATTGCTGTCTCAATCTTTTCAATCTTTAGCAGGAGTCCTCGTCACA    126
                     .|| ||||..|            .||||.|            ||.||.|.
RBAM_037690__     63 GCTGATTGGGG------------AAATCAT------------TCCTCCCG     88

BSNT_01919___    127 ATCGTTTTAATGGTCCG---------GGTCTATCAAATGACTGACTCTGT    167
                     ||||    ||.||  ||         |||.|||.|          |||| 
RBAM_037690__     89 ATCG----AAGGG--CGAAAGCGAACGGTTTATTA----------TCTG-    121

BSNT_01919___    168 TTTTTTGGCGGGCCTTATTTTATCGTTCATGTCGTTTGCGAGTATAGCAG    217
                          .|||||     ||...|.||||||    |||||||.|        
RBAM_037690__    122 -----CGGCGG-----ATCAGACCGTTCA----GTTTGCGGG--------    149

BSNT_01919___    218 CAAGCTTTTGCGTCTCTCCGGTGCTTCGCATTCTCG-GTTTTAAAAAGGT    266
                            .|| |||||||.|..||.|  |||..|.| |||||        
RBAM_037690__    150 -------GTG-GTCTCTCGGCGGCGT--CATCATAGCGTTTT--------    181

BSNT_01919___    267 GCTTGTGGGAGCGAATCTGCTGAGAGCGGTCTTTACAATCCTGATGGCAT    316
                          |||||           |||||||    .|||||   ||||     
RBAM_037690__    182 -----TGGGA-----------GAGAGCG----ATACAA---TGAT-----    203

BSNT_01919___    317 ACAGCGTCACTCATCACGGACAGGCATTCTTTTGGATTACGCTGCTGTTT    366
                         |||||||           |.||                        
RBAM_037690__    204 ----CGTCACT-----------GTCA------------------------    214

BSNT_01919___    367 GTGTT-TTGTTTTTCCTTCGCGGGCGCTTTTTTTCAGCCGGCAAGATTTG    415
                      |||| |||.|||  |||||         .||||    .||||..|||  
RBAM_037690__    215 -TGTTATTGGTTT--CTTCG---------GTTTT----GGGCATCATT--    246

BSNT_01919___    416 CGCTGCTGCCGATTATTGTTCCAAAGAAGCAATATGTAAAAGCGAATGGT    465
                          |||      .||.|||            |.|||    ||.|| ||
RBAM_037690__    247 -----CTG------TTTCTTC------------AAGTA----CGCAT-GT    268

BSNT_01919___    466 GTGATCTCTCTCTCGAATCAATTATTCTTAACAGCAGGCTGGGGCCTTGG    515
                     |||..|       ||               .||||||.|.|||       
RBAM_037690__    269 GTGCGC-------CG---------------GCAGCAGTCAGGG-------    289

BSNT_01919___    516 AGGCCTTCTGACGTACGCCGTCCCTTTTGAACTCA-TTGTCGGC--GCTG    562
                              .||||     .|||.|||||    || .|| ||||  ||.|
RBAM_037690__    290 ---------AACGT-----TTCCTTTTTG----CAGATG-CGGCAAGCGG    320

BSNT_01919___    563 CTATTTGCCTGTTTGTTCTATCGGGAGCTTCCATCAGTGTGCTGCATGTA    612
                     ||                    |||                 ||.||.||
RBAM_037690__    321 CT--------------------GGG-----------------TGTATTTA    333

BSNT_01919___    613 AATGAAGAAGAGGCTGT-AGGAACTGCTGAAACAGCATCTGCCAGAAGTA    661
                                   |.| ||.||      |||||||              
RBAM_037690__    334 --------------TTTCAGCAA------AAACAGC--------------    349

BSNT_01919___    662 TATGGAAGGATTTAATGATCATCCCTATTGTAAGAGACATTACTGTAATG    711
                       ||  |||.||     .||||                     |||.|||
RBAM_037690__    350 --TG--AGGGTT-----CTCAT---------------------TGTGATG    369

BSNT_01919___    712 GACATGATAGAAGCTTTGGCGGGTTCCGTATGGTCATCTGCTAT-TCTCC    760
                     ||..||||.|||.|.|.|||.||.....|||||  |||.|.|.| |.|||
RBAM_037690__    370 GATGTGATCGAATCGTGGGCAGGCATGATATGG--ATCGGTTCTGTGTCC    417

BSNT_01919___    761 TCGCATTTAC-----TGC--GGCTGTTTTGCATGAAACAGAGGTGTGGTG    803
                          ||.||     |||  |.| |||.|.|||.||..|||||..|||||
RBAM_037690__    418 -----TTAACTTATGTGCATGAC-GTTCTTCATAAAGGAGAGGCTTGGTG    461

BSNT_01919___    804 GGGG-ATGTTTAACGCTTCCTATTTTATAGGCGCAATTGTCGGCAGTGTG    852
                     |||| ||| |.||||....|||||.|..|||..|.||..|||||.|..||
RBAM_037690__    462 GGGGTATG-TCAACGGAGTCTATTATGCAGGGACGATGATCGGCGGACTG    510

BSNT_01919___    853 ATTGCCATTCGTTTTTCTTCTTTTTTTGAGCGGAATATGGGCTATGCCAT    902
                     ||   |||                          .|||..|.||| ||..
RBAM_037690__    511 AT---CAT--------------------------CTATAAGTTAT-CCGG    530

BSNT_01919___    903 TATG-TTCAGC-----------TCGCTTGTAATGTCGGCGCTGACCCTT-    939
                     ||.| ||||||           .|||||.|..||.|||    ||.|||| 
RBAM_037690__    531 TAAGTTTCAGCATCATCTCATTCCGCTTATGCTGACGG----GAGCCTTG    576

BSNT_01919___    940 ---------TTGTT----TTCATTT---------TCTCCAGTCCCAT---    964
                              .||||    ||.||||         ||.|.||..||.|   
RBAM_037690__    577 GCATATGGAATGTTCACGTTTATTTATGGGTTGATCACAAGCGCCGTTAC    626

BSNT_01919___    965 -----TTTTATGCGCTCTGGCTTGTGCTG-CAATGGGGCC----TTTTTA   1004
                          ||||      ||||    |||||| ..||||||||    |.|.||
RBAM_037690__    627 GGCCCTTTT------TCTG----GTGCTGTGTATGGGGCCGGCTTGTGTA    666

BSNT_01919___   1005 TCAGGTGCGTGATATTTGCCAGGAAACCATGCTGCAGGAGGTTATTCCCG   1054
                     |    |.||.|||.|....||||||||..|.||.||..|    ..||.||
RBAM_037690__    667 T----TACGAGATCTCACGCAGGAAACATTACTCCAAAA----CATCACG    708

BSNT_01919___   1055 AGCAGAAACGAATCGGAATCATGGCTGCAAAAAAT-----GCGATTTTGA   1099
                     | |.||||.||        ||.||.| |||.|.||     ||||    ||
RBAM_037690__    709 A-CCGAAAAGA--------CACGGGT-CAATATATTAGCGGCGA----GA    744

BSNT_01919___   1100 CTC--CTT--GGTCAGGCGTC------ACCTACTCCATTAT------GGG   1133
                      ||  |||  |.||||  .||      |..|..||||||||      |||
RBAM_037690__    745 -TCAGCTTTAGTTCAG--TTCATTTTTATGTTTTCCATTATCGGAACGGG    791

BSNT_01919___   1134 GCTAGTGGCTGATG----CTGCTGGTGCGAAAATAGCTTTTATCGCGGCT   1179
                     |.|..|..|.||||    |.||  |||||        .|||||       
RBAM_037690__    792 GGTCATCTCGGATGTATTCGGC--GTGCG--------GTTTAT-------    824

BSNT_01919___   1180 GCTGCATTATATATCATGACATTTCTGATTGCACTGGCGCAG--CCCCGT   1227
                           ||||||                      ||||||||  |.|| |
RBAM_037690__    825 ------TTATAT----------------------TGGCGCAGGTCTCC-T    845

BSNT_01919___   1228 CTGGTTCATTACAG----------------------GCG-----AGAAAA   1250
                     ||..||.|||.|.|                      |||     ||||.|
RBAM_037690__    846 CTTATTAATTTCGGCTTTTATCGGATTTTCTCAGCTGCGAATGAAGAAGA    895

BSNT_01919___   1251 TCGAGTTCAATGA---------   1263
                     |  .||.|||.|.         
RBAM_037690__    896 T--GGTACAAAGCCGCATGTAG    915


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