Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06274 and RBAM_038020

See Amino acid alignment / Visit BSNT_06274 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:43
# Commandline: needle
#    -asequence dna-align/BSNT_06274___yyaE.1.9828.seq
#    -bsequence dna-align/RBAM_038020___yyaE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06274___yyaE-RBAM_038020___yyaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06274___yyaE-RBAM_038020___yyaE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06274___yyaE
# 2: RBAM_038020___yyaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2034
# Identity:    1581/2034 (77.7%)
# Similarity:  1581/2034 (77.7%)
# Gaps:          60/2034 ( 2.9%)
# Score: 6056.0
# 
#
#=======================================

BSNT_06274___      1 ATGAGCAAAGTGCATCAGTCGGCATGTCCGCTGAATTGTTGGGACAGCTG     50
                     ||||||||||||||||||||.||.||.|||||||||||.|||||||||||
RBAM_038020__      1 ATGAGCAAAGTGCATCAGTCAGCGTGCCCGCTGAATTGCTGGGACAGCTG     50

BSNT_06274___     51 CGGCTTTTTGGTGACTGTTGATGATGGAAAGGTAACAAAAGTGGACGGAG    100
                     |||||||||||||||.|||||.|||||||||||.||.|||||.|||||||
RBAM_038020__     51 CGGCTTTTTGGTGACAGTTGAGGATGGAAAGGTGACGAAAGTAGACGGAG    100

BSNT_06274___    101 ATCCAAACCATCCGATTACGGAAGGTAAAATCTGCGGCCGCGGCAGAATG    150
                     |.||.||.|||||.|||||||||||.|||||.||||||||.|||||||||
RBAM_038020__    101 ACCCGAATCATCCCATTACGGAAGGGAAAATTTGCGGCCGTGGCAGAATG    150

BSNT_06274___    151 CTTGAGACAAAAACAAATTCGCCTGATCGGCTTCGCTATCCAATGAAAAA    200
                     ||.|||.|.|||||.|||.||||.||.||||||||.|.||| .|.|||||
RBAM_038020__    151 CTGGAGGCGAAAACGAATGCGCCGGAACGGCTTCGTTTTCC-TTTAAAAA    199

BSNT_06274___    201 ACA-AAATGGCGAGTTTGTGCGGATTTCTTGGGAGCAGGCACTTGATGAA    249
                     |.| |.|.|||||.|||||.||.|||||.|||||||||||..|.||||||
RBAM_038020__    200 AGATAGACGGCGAATTTGTCCGCATTTCCTGGGAGCAGGCGTTAGATGAA    249

BSNT_06274___    250 ATTGCCGATAAACTTCGGGAAATCAAGGAAACGTCGGAGACGACTGCTGT    299
                     |||||.||.|||.|...||..||.|||||.||||.||..||..|.||.||
RBAM_038020__    250 ATTGCTGAAAAAATGGCGGTGATTAAGGAGACGTTGGGCACTGCCGCAGT    299

BSNT_06274___    300 TTTGCACAGCCATGATTATGCGAATAACGGTCTGTTAAAAGCGCTTGATC    349
                     ..|||||||.||||||||.||.|||||||||||.||.||.|||||.||.|
RBAM_038020__    300 GCTGCACAGTCATGATTACGCCAATAACGGTCTTTTGAAGGCGCTCGACC    349

BSNT_06274___    350 AGCGTTTTTTTAATGGATATGGCGGCGTGACCGAAATCGTCGGAAGCATA    399
                     ||||||||||.||||||||.|||||.|||||.||.||.|..||.|||||.
RBAM_038020__    350 AGCGTTTTTTCAATGGATACGGCGGTGTGACGGAGATTGCGGGCAGCATT    399

BSNT_06274___    400 TGCTGGGGCTCCGGTATCGAGGCGCAAAGCTGGGATTTTGGCCGTTCGTA    449
                     ||||||||.|||||.||.||.|||||..||||||||||.||.|||||.||
RBAM_038020__    400 TGCTGGGGTTCCGGCATTGAAGCGCAGCGCTGGGATTTCGGGCGTTCTTA    449

BSNT_06274___    450 CGGTCACGGACCGCTTGATATTTACAACAGCAAGCATGTTGTTGTGTGGG    499
                     |||.||.|||||||||||||||||..|||||||||||||..|.||.||||
RBAM_038020__    450 CGGGCATGGACCGCTTGATATTTATCACAGCAAGCATGTGATCGTATGGG    499

BSNT_06274___    500 GAAGAAATGTATCCAGAACAAATATGCACTTATACCACCACTTGCAGCAG    549
                     |.|||||.||.|||.|.||.|||||||||.|.||.||.||..||||||||
RBAM_038020__    500 GCAGAAACGTGTCCCGGACGAATATGCACCTCTATCATCATCTGCAGCAG    549

BSNT_06274___    550 GTGAAAAAGAAGGGCGCCACAATTACGGTGATTGATCCGATCTTCAATCC    599
                     |||||.||.||.||.||.|||.|.|||||.||||||||.||.||.||.||
RBAM_038020__    550 GTGAAGAAAAAAGGAGCGACACTGACGGTCATTGATCCTATTTTTAACCC    599

BSNT_06274___    600 GACTGCCAAGCTTGCCGATCGCTATATCTCTGTAAAGCCAGGAATGGACG    649
                     |||||||||||||||||||||.|||||.||.||.||.||.||.|||||.|
RBAM_038020__    600 GACTGCCAAGCTTGCCGATCGGTATATATCCGTTAAACCCGGCATGGATG    649

BSNT_06274___    650 GCTGGCTTGCGGCAGCCGTTTTGAAAGTTCTGATT----GAGACGGGAAG    695
                     |||||||||||||.|..|||||.|||||    |||    .|.||.||.||
RBAM_038020__    650 GCTGGCTTGCGGCGGGTGTTTTAAAAGT----ATTATGCCAAACCGGCAG    695

BSNT_06274___    696 AACGGAT---GAAACGTTTATTTCTGA-GCACTCTGTCGGTTTTGATGAT    741
                     |||.|||   ||    |||..|||..| |||.||.|||||||||||.||.
RBAM_038020__    696 AACCGATTCCGA----TTTCATTCAAAGGCATTCGGTCGGTTTTGAAGAA    741

BSNT_06274___    742 GT-GAAAGAGCTTTTGAAGACCGTTTCTCTGGAAGAGTTTATTGTGAAAA    790
                     .| |||| |||||.||.||||..|||||.|.||.|||.|.||||.|||||
RBAM_038020__    742 ATAGAAA-AGCTTCTGCAGACGATTTCTATTGAGGAGATCATTGAGAAAA    790

BSNT_06274___    791 CAGAAACTTCTATGGAGGACCTGGAGTATCTGGCCGCTTTGTATGCTGAT    840
                     |||||||.|||.|.||.|...|.||.|||||.||.|.|||.||||||||.
RBAM_038020__    791 CAGAAACGTCTTTAGAAGTGATTGAATATCTTGCTGATTTATATGCTGAC    840

BSNT_06274___    841 GGTCCGGTGTCTACTTTTATGGGGCTTGGCATGCAGCGTTATAAAAACGG    890
                     |||||.|..||.|||||||||||.|||||.||||||.|.|||||||||||
RBAM_038020__    841 GGTCCCGCCTCCACTTTTATGGGTCTTGGGATGCAGAGATATAAAAACGG    890

BSNT_06274___    891 CGGGGGAACGATTCGTTGGATTGATGCACTCGTTGCGGCAAGCGGAAATG    940
                     .||.||.|||||.||.||||||||.||..|.|.||||||.||||||||||
RBAM_038020__    891 GGGCGGGACGATACGGTGGATTGACGCTTTAGCTGCGGCGAGCGGAAATG    940

BSNT_06274___    941 TCGGAATTAAGGGCGGCGGCGCGAATTTCGGAAATGTCCAGATTGGTGAG    990
                     ||||.||.||.|||||||||||.||.|||||||||||.||..|.|||||.
RBAM_038020__    941 TCGGTATCAAAGGCGGCGGCGCAAACTTCGGAAATGTGCAAGTCGGTGAA    990

BSNT_06274___    991 AGCTTTGCAAAAACAAAGCTGACGCTGCCGGAATTAAAAACAACATCCCG   1040
                     |||||||||||..|..||||.||.|..||.||..|.||.|.||..||..|
RBAM_038020__    991 AGCTTTGCAAAGGCTGAGCTCACCCGTCCTGATCTGAAGAAAAGTTCGAG   1040

BSNT_06274___   1041 TTCTTTTTCAATGATGACACAGGCTGAAGAAGTGTTGACCGCTGCTGATC   1090
                     ..|.|||||.||||||||.||.||.|||||.|.|.|||..||.||.||||
RBAM_038020__   1041 AACGTTTTCGATGATGACTCAAGCCGAAGAGGCGCTGAATGCAGCCGATC   1090

BSNT_06274___   1091 CTGCGATTGAGATGATTATTGTGACGTGCGGAAATCCGCTGACTCAGGTG   1140
                     |..|||||||||||||.||.|||||||||||.|||||||||||.||||||
RBAM_038020__   1091 CGCCGATTGAGATGATCATCGTGACGTGCGGCAATCCGCTGACACAGGTG   1140

BSNT_06274___   1141 CCGAATACAAATAAGGTGAGACAAGCATTTGAAAAGGTTCCCATGACGGT   1190
                     |||||||||||.||.||||...|||||||||||||....||..|.||.||
RBAM_038020__   1141 CCGAATACAAAAAAAGTGAAGGAAGCATTTGAAAAAACACCGGTCACAGT   1190

BSNT_06274___   1191 CGCGATTGATTCCATTATGACGGATACCGCAGAGCTGTGTGATTATGTTT   1240
                     .||.||||||||..|.|||||.|||||.||..||||.|||||.|||||..
RBAM_038020__   1191 GGCCATTGATTCTGTCATGACCGATACGGCGAAGCTCTGTGACTATGTGC   1240

BSNT_06274___   1241 TGCCGACTGCCACTGTTTTTGAAGAAGAAGATATCTACTATTCCAGTATG   1290
                     |||||||.|||..||||||.|||||.||||||||.||.||||||||.|||
RBAM_038020__   1241 TGCCGACGGCCGTTGTTTTCGAAGAGGAAGATATTTATTATTCCAGCATG   1290

BSNT_06274___   1291 TATCATCATTATGTTCAGTACGGGAAGAAGCTTGTGGAGCCGCAGGGTGA   1340
                     ||||||||.||||||||.||.||.||||||||||.|||.||||||||.||
RBAM_038020__   1291 TATCATCACTATGTTCAATATGGCAAGAAGCTTGCGGAACCGCAGGGAGA   1340

BSNT_06274___   1341 AGCGAAATCGGACAGCTGGATCTGGTCAGAGCTTGCAAAACGTCTTGGGT   1390
                     .||.|||||.|||.|||||||||||.|.||.||.|||||.|||||.||.|
RBAM_038020__   1341 GGCAAAATCAGACCGCTGGATCTGGACGGAACTCGCAAAGCGTCTCGGAT   1390

BSNT_06274___   1391 TTGGCGAGCTGTTTGAATACAGCACTCAAGAATTTTTAGAGATGGGGCTT   1440
                     |.||.|||||.|||||.|||||.||..||||.||.|||.|.||||||||.
RBAM_038020__   1391 TCGGGGAGCTCTTTGATTACAGTACGGAAGATTTCTTAAAAATGGGGCTC   1440

BSNT_06274___   1441 TCCTCATTGGAAGCAG-AGGATGTGACACTTGAGCGTTTAAAAGAAAAAG   1489
                     ||.||.|||||...|| |||| .|.||.|||||||..|||||.|||||||
RBAM_038020__   1441 TCTTCTTTGGAGAAAGAAGGA-ATCACCCTTGAGCAATTAAAGGAAAAAG   1489

BSNT_06274___   1490 GCCACCTCCCTCTTCCAGTAAAACAGGTGCCGTGGGATGATTATCAGTTT   1539
                     |.||..|.||.|||||.||.||||||||.||||||..|||||.|||.|||
RBAM_038020__   1490 GACATATGCCGCTTCCGGTCAAACAGGTTCCGTGGAGTGATTTTCAATTT   1539

BSNT_06274___   1540 TTGACGCCGAGTGGAAAATTTGAATTTACTTCGTCGCTAGCTGAGCAAAA   1589
                     ||.||.|||||.||||||||||||||....|||||.||.||.||..|.||
RBAM_038020__   1540 TTAACCCCGAGCGGAAAATTTGAATTCGTCTCGTCACTGGCAGAAGAGAA   1589

BSNT_06274___   1590 AGGATTTAGCGG-CTCGCTTCAATTAAATGTGCCCGAAGAATCTGTTTTC   1638
                     |||||..||||| ||| |.||||||..|.|||||.||.||.|||||||  
RBAM_038020__   1590 AGGATACAGCGGCCTC-CCTCAATTGGAAGTGCCGGAGGAGTCTGTTT--   1636

BSNT_06274___   1639 CATAATGA----GGAGTTAGCTGAAAAGTACCCTTATACGCTGTTATCCA   1684
                      ||.||||    ||| .|.||.|..||.||.||.|||||||||.|.||||
RBAM_038020__   1637 -ATCATGACGCCGGA-CTGGCGGGGAAATATCCGTATACGCTGCTGTCCA   1684

BSNT_06274___   1685 TTCATCCGCAGCGTTCCAACCATTCACAGCATGTGCCGTTTATTGAAAAG   1734
                     ||||.||||||||.|||||.|||||||||||.||||||||||||||||||
RBAM_038020__   1685 TTCACCCGCAGCGCTCCAATCATTCACAGCACGTGCCGTTTATTGAAAAG   1734

BSNT_06274___   1735 CTTCAGCACGTTCAGGTCGATATTTCTCCAGATATAGCTGCTGAGCAGAA   1784
                     ||||||||..|||||||.|||.|.|||||.|||||.||.|..||||    
RBAM_038020__   1735 CTTCAGCAGATTCAGGTGGATCTGTCTCCGGATATCGCCGAGGAGC----   1780

BSNT_06274___   1785 T----CTTCAGGATGGAGA------CGAGGTTGTCAT-CTTTAATGACCG   1823
                     |    |||||.||.|||||      .|||||    || |   ||||||||
RBAM_038020__   1781 TTTCACTTCAAGACGGAGATACGGCAGAGGT----ATAC---AATGACCG   1823

BSNT_06274___   1824 CGGACGCTTGAAGGGCAAGGTGAAAGTGATGAAGCAGGCTCATGCGAAGA   1873
                     |||.||..||...||||.|||||||.|.||||||||||||||..||||||
RBAM_038020__   1824 CGGCCGTCTGCGCGGCAGGGTGAAAATCATGAAGCAGGCTCACCCGAAGA   1873

BSNT_06274___   1874 CGATTAATATAGATGAAGGCATGTGGGCGGCTTTTGGAGGGTCAGTCAAT   1923
                     ||.|.||||||||||||||||||||||||||.||.|||||.||.||||| 
RBAM_038020__   1874 CGGTGAATATAGATGAAGGCATGTGGGCGGCATTCGGAGGCTCCGTCAA-   1922

BSNT_06274___   1924 GCA--CTGACAAATGATACAAATTCTGATAATGGAATGGGAAGTACGCTT   1971
                      ||  ||.|||||.|||.||||||||||||||||||||||||||||||||
RBAM_038020__   1923 -CATGCTCACAAAGGATTCAAATTCTGATAATGGAATGGGAAGTACGCTT   1971

BSNT_06274___   1972 TTTGACTGTTTAGTAG-GCTTGAAAAAAGCATAA   2004
                     |||||||||.|.|||| |.|| |||||||.||||
RBAM_038020__   1972 TTTGACTGTCTGGTAGCGGTT-AAAAAAGGATAA   2004


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